RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TMEM121Q9BTD3 319 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 ZCCHC2Q9C0B9 1178 aaKnown RBP13.81□□□□□ -0.2
UPF3A-204ENST00000475218 SEMA5BQ9P283 1151 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 EPHA6Q9UF33 1036 aa13.81□□□□□ -0.2
UPF3A-204ENST00000475218 IGLV3-16A0A075B6K0 115 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 LOC101059948A0A1B0GTJ6 334 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 MGAT4DA6NG13 374 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 STK17BO94768 372 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 STK10O94804 968 aaKnown RBP13.8□□□□□ -0.2
UPF3A-204ENST00000475218 ITGB2P05107 769 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 AMD1P17707 334 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 TPH1P17752 444 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 VCLP18206 1134 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 ITGB6P18564 788 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 AKT1P31749 480 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 SEPHS1P49903 392 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 FAM92BQ6ZTR7 304 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 PRSS42Q7Z5A4 293 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 RBM12BQ8IXT5 1001 aaKnown RBP13.8□□□□□ -0.2
UPF3A-204ENST00000475218 UNC5BQ8IZJ1 945 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 PIAS4Q8N2W9 510 aaPredicted RBP13.8□□□□□ -0.2
UPF3A-204ENST00000475218 NXPE1Q8N323 547 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 OR2L2Q8NH16 312 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 KLHL6Q8WZ60 621 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 DNAJC1Q96KC8 554 aaKnown RBP13.8□□□□□ -0.2
UPF3A-204ENST00000475218 LINC00615Q96LM1 132 aaPredicted RBP13.8□□□□□ -0.2
UPF3A-204ENST00000475218 TEFMQ96QE5 360 aaKnown RBP13.8□□□□□ -0.2
UPF3A-204ENST00000475218 C19orf43Q9BQ61 176 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 RAB33BQ9H082 229 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 WWP1Q9H0M0 922 aa13.8□□□□□ -0.2
UPF3A-204ENST00000475218 PIH1D1Q9NWS0 290 aaKnown RBP13.8□□□□□ -0.2
UPF3A-204ENST00000475218 IGHV5-51A0A0C4DH38 117 aa13.79□□□□□ -0.2
UPF3A-204ENST00000475218 TRBV5-4A0A0C4DH59 114 aa13.79□□□□□ -0.2
UPF3A-204ENST00000475218 TOX3O15405 576 aaPredicted RBP13.79□□□□□ -0.2
UPF3A-204ENST00000475218 FAM87AP0C7U9 286 aa13.79□□□□□ -0.2
UPF3A-204ENST00000475218 MTHFD1P11586 935 aaKnown RBP13.79□□□□□ -0.2
UPF3A-204ENST00000475218 MSH3P20585 1137 aa13.79□□□□□ -0.2
UPF3A-204ENST00000475218 PSMA3P25788 255 aa13.79□□□□□ -0.2
UPF3A-204ENST00000475218 OASLQ15646 514 aaKnown RBP13.79□□□□□ -0.2
UPF3A-204ENST00000475218 LONRF2Q1L5Z9 754 aa13.79□□□□□ -0.2
UPF3A-204ENST00000475218 CEACAM20Q6UY09 585 aa13.79□□□□□ -0.2
UPF3A-204ENST00000475218 PIANPQ8IYJ0 282 aa13.79□□□□□ -0.2
UPF3A-204ENST00000475218 SYCE1Q8N0S2 351 aa13.79□□□□□ -0.2
UPF3A-204ENST00000475218 TAB3Q8N5C8 712 aaPredicted RBP13.79□□□□□ -0.2
UPF3A-204ENST00000475218 IL22RA1Q8N6P7 574 aa13.79□□□□□ -0.2
UPF3A-204ENST00000475218 UBL4BQ8N7F7 174 aa13.79□□□□□ -0.2
UPF3A-204ENST00000475218 TTC13Q8NBP0 860 aa13.79□□□□□ -0.2
UPF3A-204ENST00000475218 RMDN2Q96LZ7 410 aa13.79□□□□□ -0.2
UPF3A-204ENST00000475218 NRTNQ99748 197 aa13.79□□□□□ -0.2
UPF3A-204ENST00000475218 FERMT1Q9BQL6 677 aa13.79□□□□□ -0.2
UPF3A-204ENST00000475218 POLR1CO15160 346 aaPredicted RBP13.78□□□□□ -0.2
UPF3A-204ENST00000475218 CRTAMO95727 393 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 F8A1P23610 371 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 CETN2P41208 172 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 HALP42357 657 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 PRLHRP49683 370 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 ATP1A2P50993 1020 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 CAPRIN2Q6IMN6 1127 aaKnown RBP13.78□□□□□ -0.2
UPF3A-204ENST00000475218 NLGN4XQ8N0W4 816 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 NLGN4YQ8NFZ3 816 aaPredicted RBP13.78□□□□□ -0.2
UPF3A-204ENST00000475218 ZNF514Q96K75 400 aaPredicted RBP13.78□□□□□ -0.2
UPF3A-204ENST00000475218 FAM8A1Q9UBU6 413 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 IL17BQ9UHF5 180 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 H7C0S8 307 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 TIAF1O95411 115 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 AP2A1O95782 977 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 MC4RP32245 332 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 CERS6Q6ZMG9 384 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 ARHGEF18Q6ZSZ5 1173 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 SNX20Q7Z614 316 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 PRUNE1Q86TP1 453 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 SLC41A2Q96JW4 573 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 OR6C1Q96RD1 312 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 ZPBPQ9BS86 351 aa13.78□□□□□ -0.2
UPF3A-204ENST00000475218 IMP3Q9NV31 184 aaKnown RBP13.78□□□□□ -0.2
UPF3A-204ENST00000475218 NLE1Q9NVX2 485 aaPredicted RBP13.78□□□□□ -0.2
UPF3A-204ENST00000475218 FEZ2Q9UHY8 353 aaPredicted RBP13.78□□□□□ -0.2
UPF3A-204ENST00000475218 PIKFYVEQ9Y2I7 2098 aa13.77□□□□□ -0.2
UPF3A-204ENST00000475218 GOLGA6L9A6NEM1 432 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 MROH6A6NGR9 719 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 TERTO14746 1132 aaKnown RBP13.77□□□□□ -0.21
UPF3A-204ENST00000475218 LIASO43766 372 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 FOLR1P15328 257 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 NELFEP18615 380 aaKnown RBP13.77□□□□□ -0.21
UPF3A-204ENST00000475218 STAT5AP42229 794 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 FOXM1Q08050 763 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 KCNAB1Q14722 419 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 POU6F1Q14863 301 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 SIX1Q15475 284 aaPredicted RBP13.77□□□□□ -0.21
UPF3A-204ENST00000475218 CACHD1Q5VU97 1274 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 IRGCQ6NXR0 463 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 ZNF605Q86T29 641 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 RNF10Q8N5U6 811 aaKnown RBP13.77□□□□□ -0.21
UPF3A-204ENST00000475218 GLIS1Q8NBF1 620 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 SLC45A3Q96JT2 553 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 C12orf66Q96MD2 445 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 PPM1MQ96MI6 270 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 PPP1R2P1Q96PQ5 205 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 LRRC40Q9H9A6 602 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 SLC24A2Q9UI40 661 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms