RNA–Protein interactions for RNA: ENST00000444508.5

SMARCAL1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

TSL 2

Gene SMARCAL1, Length 711 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-209ENST00000444508 CLPPQ16740 277 aaPredicted RBP17.11■□□□□ 0.33
SMARCAL1-209ENST00000444508 UNQ6494/PRO21346Q6UXR6 183 aa17.11■□□□□ 0.33
SMARCAL1-209ENST00000444508 ZNF761Q86XN6 746 aaPredicted RBP17.11■□□□□ 0.33
SMARCAL1-209ENST00000444508 RBM12BQ8IXT5 1001 aaKnown RBP17.11■□□□□ 0.33
SMARCAL1-209ENST00000444508 OR10G6Q8NH81 332 aa17.11■□□□□ 0.33
SMARCAL1-209ENST00000444508 GATA6Q92908 595 aa17.11■□□□□ 0.33
SMARCAL1-209ENST00000444508 STAMBPL1Q96FJ0 436 aa17.11■□□□□ 0.33
SMARCAL1-209ENST00000444508 AHCYL2Q96HN2 611 aaKnown RBP17.11■□□□□ 0.33
SMARCAL1-209ENST00000444508 SIGLEC10Q96LC7 697 aa17.11■□□□□ 0.33
SMARCAL1-209ENST00000444508 TSSK1BQ9BXA7 367 aa17.11■□□□□ 0.33
SMARCAL1-209ENST00000444508 MARCH4Q9P2E8 410 aaPredicted RBP17.11■□□□□ 0.33
SMARCAL1-209ENST00000444508 ZNF624Q9P2J8 865 aaPredicted RBP17.11■□□□□ 0.33
SMARCAL1-209ENST00000444508 ATXN7L1Q9ULK2 861 aaPredicted RBP17.11■□□□□ 0.33
SMARCAL1-209ENST00000444508 WDR37Q9Y2I8 494 aa17.11■□□□□ 0.33
SMARCAL1-209ENST00000444508 PRSS21Q9Y6M0 314 aa17.11■□□□□ 0.33
SMARCAL1-209ENST00000444508 RPS6KL1Q9Y6S9 549 aa17.11■□□□□ 0.33
SMARCAL1-209ENST00000444508 TPRP12270 2363 aaKnown RBP17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 PIKFYVEQ9Y2I7 2098 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 IGHV1OR21-1A0A087WYE8 117 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 TRABD2BA6NFA1 517 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 DUX1O43812 170 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 NDUFS3O75489 264 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 SEC31AO94979 1220 aaKnown RBP17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 POLBP06746 335 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 ITGA8P53708 1063 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 EPHA4P54764 986 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 CAMK2BQ13554 666 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 CLCA4Q14CN2 919 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 ANKRD20A4Q4UJ75 823 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 HIBCHQ6NVY1 386 aaPredicted RBP17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 LDB1Q86U70 411 aaPredicted RBP17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 TMEM135Q86UB9 458 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 PIM3Q86V86 326 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 PDIK1LQ8N165 341 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 BBOF1Q8ND07 529 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 NXPE2Q96DL1 559 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 TMEM74Q96NL1 305 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 WWP1Q9H0M0 922 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 COG4Q9H9E3 785 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 UCK1Q9HA47 277 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 PCDHB1Q9Y5F3 818 aa17.1■□□□□ 0.33
SMARCAL1-209ENST00000444508 LILRA5A6NI73 299 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 C1QTNF9BB2RNN3 333 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 GOLGA8KD6RF30 607 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 GOLGA8TH3BQL2 631 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 RAD51CO43502 376 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 USP1O94782 785 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 C1QTNF9P0C862 333 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 PGAM1P18669 254 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 ARNTP27540 789 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 CD1CP29017 333 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 MAPK9P45984 424 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 ARCN1P48444 511 aaKnown RBP17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 INHBCP55103 352 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 ARL4CP56559 192 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 MRPS25P82663 173 aaKnown RBP17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 THOC5Q13769 683 aaKnown RBP17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 RPE65Q16518 533 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 WHAMMP3Q1A5X7 153 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 BBS9Q3SYG4 887 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 SYTL3Q4VX76 610 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 RNF187Q5TA31 235 aaPredicted RBP17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 NKAIN2Q5VXU1 208 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 TMEM26Q6ZUK4 368 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 USP53Q70EK8 1073 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 ZNF572Q7Z3I7 529 aaPredicted RBP17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 ELMO1Q92556 727 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 ATXN7L3BQ96GX2 97 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 C12orf66Q96MD2 445 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 TCF12Q99081 682 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 DPYSL5Q9BPU6 564 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 TRIM56Q9BRZ2 755 aaKnown RBP17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 ERP44Q9BS26 406 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 NAT9Q9BTE0 207 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 STRADBQ9C0K7 418 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 NRSN2Q9GZP1 204 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 EPB41L1Q9H4G0 881 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 RDH14Q9HBH5 336 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 IMP3Q9NV31 184 aaKnown RBP17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 SNX24Q9Y343 169 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 ENTPD2Q9Y5L3 495 aa17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 COL27A1Q8IZC6 1860 aaPredicted RBP17.09■□□□□ 0.33
SMARCAL1-209ENST00000444508 IGF2RP11717 2491 aa17.08■□□□□ 0.33
SMARCAL1-209ENST00000444508 IFRD1O00458 451 aaPredicted RBP17.08■□□□□ 0.32
SMARCAL1-209ENST00000444508 PRMT5O14744 637 aaPredicted RBP17.08■□□□□ 0.32
SMARCAL1-209ENST00000444508 LIN7AO14910 233 aaPredicted RBP17.08■□□□□ 0.32
SMARCAL1-209ENST00000444508 MTHFD1P11586 935 aaKnown RBP17.08■□□□□ 0.32
SMARCAL1-209ENST00000444508 OGNP20774 298 aaKnown RBP17.08■□□□□ 0.32
SMARCAL1-209ENST00000444508 RPL21P46778 160 aaKnown RBP17.08■□□□□ 0.32
SMARCAL1-209ENST00000444508 PDX1P52945 283 aa17.08■□□□□ 0.32
SMARCAL1-209ENST00000444508 DHX9Q08211 1270 aaKnown RBP17.08■□□□□ 0.32
SMARCAL1-209ENST00000444508 CALCOCO2Q13137 446 aa17.08■□□□□ 0.32
SMARCAL1-209ENST00000444508 RPA4Q13156 261 aa17.08■□□□□ 0.32
SMARCAL1-209ENST00000444508 HIF1AQ16665 826 aa17.08■□□□□ 0.32
SMARCAL1-209ENST00000444508 LONRF1Q17RB8 773 aa17.08■□□□□ 0.32
SMARCAL1-209ENST00000444508 NEPROQ6NW34 567 aa17.08■□□□□ 0.32
SMARCAL1-209ENST00000444508 LRRC6Q86X45 466 aa17.08■□□□□ 0.32
SMARCAL1-209ENST00000444508 AGGF1Q8N302 714 aaeCLIP17.08■□□□□ 0.32
SMARCAL1-209ENST00000444508 LILRA3Q8N6C8 439 aaPredicted RBP17.08■□□□□ 0.32
SMARCAL1-209ENST00000444508 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms