RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 SHMT2P34897 504 aa11□□□□□ -0.65
CUX1-204ENST00000393824 AIF1P55008 147 aa11□□□□□ -0.65
CUX1-204ENST00000393824 GALNT1Q10472 559 aaPredicted RBP11□□□□□ -0.65
CUX1-204ENST00000393824 TAF10Q12962 218 aa11□□□□□ -0.65
CUX1-204ENST00000393824 PRPSAP1Q14558 356 aa11□□□□□ -0.65
CUX1-204ENST00000393824 HIST2H2ACQ16777 129 aaPredicted RBP11□□□□□ -0.65
CUX1-204ENST00000393824 CYP51A1Q16850 503 aa11□□□□□ -0.65
CUX1-204ENST00000393824 LARP4Q71RC2 724 aaKnown RBP eCLIP11□□□□□ -0.659e-6■■■■□ 21.5
CUX1-204ENST00000393824 BNIPLQ7Z465 357 aa11□□□□□ -0.65
CUX1-204ENST00000393824 PTRH1Q86Y79 214 aaKnown RBP11□□□□□ -0.65
CUX1-204ENST00000393824 CCNYQ8ND76 341 aa11□□□□□ -0.65
CUX1-204ENST00000393824 ELMO2Q96JJ3 720 aa11□□□□□ -0.65
CUX1-204ENST00000393824 SPATA17Q96L03 361 aa11□□□□□ -0.65
CUX1-204ENST00000393824 VAT1Q99536 393 aa11□□□□□ -0.65
CUX1-204ENST00000393824 MTIF3Q9H2K0 278 aaKnown RBP11□□□□□ -0.65
CUX1-204ENST00000393824 EML4Q9HC35 981 aaKnown RBP11□□□□□ -0.65
CUX1-204ENST00000393824 ENTPD7Q9NQZ7 604 aa11□□□□□ -0.65
CUX1-204ENST00000393824 IARS2Q9NSE4 1012 aaKnown RBP11□□□□□ -0.65
CUX1-204ENST00000393824 CMTM6Q9NX76 183 aa11□□□□□ -0.65
CUX1-204ENST00000393824 KLHL8Q9P2G9 620 aaPredicted RBP11□□□□□ -0.65
CUX1-204ENST00000393824 BAG5Q9UL15 447 aa11□□□□□ -0.65
CUX1-204ENST00000393824 YIPF1Q9Y548 306 aa11□□□□□ -0.65
CUX1-204ENST00000393824 MUC3AQ02505 3323 aa11□□□□□ -0.65
CUX1-204ENST00000393824 FAM172BPA6NC97 362 aa11□□□□□ -0.65
CUX1-204ENST00000393824 C5orf67F2Z3F1 127 aa11□□□□□ -0.65
CUX1-204ENST00000393824 FXYD1O00168 92 aa11□□□□□ -0.65
CUX1-204ENST00000393824 DYRK3O43781 588 aa11□□□□□ -0.65
CUX1-204ENST00000393824 SCO2O43819 266 aa11□□□□□ -0.65
CUX1-204ENST00000393824 GUCY1B2O75343 617 aa11□□□□□ -0.65
CUX1-204ENST00000393824 HTR1AP08908 422 aa11□□□□□ -0.65
CUX1-204ENST00000393824 HNRNPLP14866 589 aaKnown RBP eCLIP11□□□□□ -0.656e-8■■■■■ 28.9
CUX1-204ENST00000393824 GPX3P22352 226 aa11□□□□□ -0.65
CUX1-204ENST00000393824 SLC6A2P23975 617 aa11□□□□□ -0.65
CUX1-204ENST00000393824 ATP5F1P24539 256 aaPredicted RBP11□□□□□ -0.65
CUX1-204ENST00000393824 PTPN3P26045 913 aa11□□□□□ -0.65
CUX1-204ENST00000393824 SERPINB10P48595 397 aa11□□□□□ -0.65
CUX1-204ENST00000393824 PPP5CP53041 499 aa11□□□□□ -0.65
CUX1-204ENST00000393824 PHC1P78364 1004 aa11□□□□□ -0.65
CUX1-204ENST00000393824 ECT2LQ008S8 904 aa11□□□□□ -0.65
CUX1-204ENST00000393824 CLCQ05315 142 aa11□□□□□ -0.65
CUX1-204ENST00000393824 DGUOKQ16854 277 aa11□□□□□ -0.65
CUX1-204ENST00000393824 PAGE2BQ5JRK9 111 aa11□□□□□ -0.65
CUX1-204ENST00000393824 TBPL2Q6SJ96 375 aa11□□□□□ -0.65
CUX1-204ENST00000393824 ADGRD2Q7Z7M1 963 aa11□□□□□ -0.65
CUX1-204ENST00000393824 RBM23Q86U06 439 aaKnown RBP11□□□□□ -0.65
CUX1-204ENST00000393824 PYROXD2Q8N2H3 581 aa11□□□□□ -0.65
CUX1-204ENST00000393824 ESX1Q8N693 406 aa11□□□□□ -0.65
CUX1-204ENST00000393824 MRPL43Q8N983 215 aaKnown RBP11□□□□□ -0.65
CUX1-204ENST00000393824 DNAAF3Q8N9W5 541 aa11□□□□□ -0.65
CUX1-204ENST00000393824 TXNDC5Q8NBS9 432 aaKnown RBP11□□□□□ -0.65
CUX1-204ENST00000393824 PHF10Q8WUB8 498 aaKnown RBP11□□□□□ -0.65
CUX1-204ENST00000393824 SLC22A17Q8WUG5 538 aa11□□□□□ -0.65
CUX1-204ENST00000393824 TP53INP1Q96A56 240 aa11□□□□□ -0.65
CUX1-204ENST00000393824 LRCH3Q96II8 777 aa11□□□□□ -0.65
CUX1-204ENST00000393824 KLHL5Q96PQ7 755 aa11□□□□□ -0.65
CUX1-204ENST00000393824 NPY6RQ99463 290 aa11□□□□□ -0.65
CUX1-204ENST00000393824 MRPL57Q9BQC6 102 aaKnown RBP11□□□□□ -0.65
CUX1-204ENST00000393824 BDH2Q9BUT1 245 aa11□□□□□ -0.65
CUX1-204ENST00000393824 NECTIN3Q9NQS3 549 aa11□□□□□ -0.65
CUX1-204ENST00000393824 IL37Q9NZH6 218 aa11□□□□□ -0.65
CUX1-204ENST00000393824 SEPT10Q9P0V9 454 aa11□□□□□ -0.65
CUX1-204ENST00000393824 NAALAD2Q9Y3Q0 740 aa11□□□□□ -0.65
CUX1-204ENST00000393824 PCDHGA11Q9Y5H2 935 aa11□□□□□ -0.65
CUX1-204ENST00000393824 ZNF638Q14966 1978 aaKnown RBP10.99□□□□□ -0.65
CUX1-204ENST00000393824 FAM92AA1XBS5 289 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 M0QYT0 321 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 DCLK1O15075 740 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 ASNA1O43681 348 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 DAB1O75553 588 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 MTRF1O75570 445 aaKnown RBP10.99□□□□□ -0.65
CUX1-204ENST00000393824 RFPL2O75678 378 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 ARSAP15289 507 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 HCAR3P49019 387 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 SULT1E1P49888 294 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 FOXM1Q08050 763 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 TWF1Q12792 350 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 POLD3Q15054 466 aaPredicted RBP10.99□□□□□ -0.65
CUX1-204ENST00000393824 DPY19L1Q2PZI1 675 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 LILRA6Q6PI73 481 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 TAC4Q86UU9 113 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 GRAMD2AQ8IUY3 354 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 CNTN4Q8IWV2 1026 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 KLHDC8BQ8IXV7 354 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 Q8N9G6 341 aaPredicted RBP10.99□□□□□ -0.65
CUX1-204ENST00000393824 OR7A2PQ8NGA2 310 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 RHOXF1Q8NHV9 184 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 OSCP1Q8WVF1 389 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 NXNL1Q96CM4 212 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 CCDC126Q96EE4 140 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 IL12RB2Q99665 862 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 OMDQ99983 421 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 KIFC1Q9BW19 673 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 CEP41Q9BYV8 373 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 WDR6Q9NNW5 1121 aaKnown RBP10.99□□□□□ -0.65
CUX1-204ENST00000393824 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.99□□□□□ -0.65
CUX1-204ENST00000393824 ANAPC2Q9UJX6 822 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 SATB2Q9UPW6 733 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 UGT2A1Q9Y4X1 527 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 GREB1Q4ZG55 1949 aa10.99□□□□□ -0.65
CUX1-204ENST00000393824 COL4A4P53420 1690 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms