RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 KELP23276 732 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 PSMA3P25788 255 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 PGGT1BP53609 377 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 ALDH18A1P54886 795 aaKnown RBP10.07□□□□□ -0.8
VPS53-202ENST00000389040 PFN3P60673 137 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 POU4F1Q01851 419 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 FGL2Q14314 439 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 ZNF460Q14592 562 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 LRRC73Q5JTD7 316 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 PNCKQ6P2M8 343 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 ZYG11AQ6WRX3 759 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 MAVSQ7Z434 540 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 GLT6D1Q7Z4J2 308 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 TMEM151AQ8N4L1 468 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 DEFB119Q8N690 84 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 GPATCH11Q8N954 259 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 TP53I13Q8NBR0 393 aaPredicted RBP10.07□□□□□ -0.8
VPS53-202ENST00000389040 KCTD4Q8WVF5 259 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 NUS1Q96E22 293 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 ELMO2Q96JJ3 720 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 MIPEPQ99797 713 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 ZSCAN5AQ9BUG6 496 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 MIR1-1HGQ9H1L0 117 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 ARRDC1-AS1Q9H2J1 176 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 FAM83DQ9H4H8 585 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 EBF2Q9HAK2 575 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 GPR27Q9NS67 375 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 TMEM74BQ9NUR3 256 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 DNAJC28Q9NX36 388 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 APPL1Q9UKG1 709 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 RUVBL2Q9Y230 463 aaKnown RBP10.07□□□□□ -0.8
VPS53-202ENST00000389040 A0A087X1B8 175 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 A0A1W2PR77 199 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 GYG2O15488 501 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 KLHL2O95198 593 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 SBK3P0C264 359 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 MAOBP27338 520 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 HTR1BP28222 390 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 GLRBP48167 497 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 LEPRP48357 1165 aaKnown RBP10.06□□□□□ -0.8
VPS53-202ENST00000389040 PRKAA2P54646 552 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 SLC12A2P55011 1212 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 C21orf59P57076 290 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 TAS2R39P59534 338 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 TUBB3Q13509 450 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 WSCD2Q2TBF2 565 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 LIPMQ5VYY2 423 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 LRRC8EQ6NSJ5 796 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 Q6ZVL8 140 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 ARMCX6Q7L4S7 300 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 LYSMD3Q7Z3D4 306 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 HSD11B1LQ7Z5J1 315 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 GALNT7Q86SF2 657 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 TSPAN33Q86UF1 283 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 TREML1Q86YW5 311 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 FAM13CQ8NE31 585 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 STYXQ8WUJ0 223 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 KLHDC7BQ96G42 594 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 SCYL1Q96KG9 808 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 GPR78Q96P69 363 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 CCDC106Q9BWC9 280 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 AASDHPPTQ9NRN7 309 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 FAM86C1Q9NVL1 165 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 IL17CQ9P0M4 197 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 APOBEC2Q9Y235 224 aaKnown RBP10.06□□□□□ -0.8
VPS53-202ENST00000389040 FANCMQ8IYD8 2048 aa10.06□□□□□ -0.8
VPS53-202ENST00000389040 GPR89AB7ZAQ6 455 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 ZNF195O14628 629 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 TNFRSF10CO14798 259 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 AURKAO14965 403 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 STX7O15400 261 aaKnown RBP10.05□□□□□ -0.8
VPS53-202ENST00000389040 LDB2O43679 373 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 GPR89BP0CG08 455 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 CCND1P24385 295 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 ETV3P41162 512 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 IDH3AP50213 366 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 TSNAXIP1Q2TAA8 658 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 TRIM61Q5EBN2 209 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 HENMT1Q5T8I9 393 aaKnown RBP10.05□□□□□ -0.8
VPS53-202ENST00000389040 CNSTQ6PJW8 725 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 ADAMTSL4Q6UY14 1074 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 RINLQ6ZS11 566 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 CILP2Q8IUL8 1156 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 LMNTD2Q8IXW0 634 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 FSTL5Q8N475 847 aaPredicted RBP10.05□□□□□ -0.8
VPS53-202ENST00000389040 TTC30BQ8N4P2 665 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 TRAM1L1Q8N609 369 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 ZNF781Q8N8C0 355 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 BLOC1S5Q8TDH9 187 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 AP2M1Q96CW1 435 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 BMFQ96LC9 184 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 TBATAQ96M53 351 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 GATA5Q9BWX5 397 aaPredicted RBP10.05□□□□□ -0.8
VPS53-202ENST00000389040 CADM1Q9BY67 442 aaKnown RBP10.05□□□□□ -0.8
VPS53-202ENST00000389040 SEMA4GQ9NTN9 838 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.05□□□□□ -0.81e-7■□□□□ 10.9
VPS53-202ENST00000389040 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.05□□□□□ -0.8
VPS53-202ENST00000389040 MUC6Q6W4X9 2439 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 A8MX80 341 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 TARM1B6A8C7 271 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms