RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 AGAP11Q8TF27 550 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 DCUN1D1Q96GG9 259 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 MIPEPQ99797 713 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 MEAF6Q9HAF1 191 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 MID1IP1Q9NPA3 183 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 SEMA4BQ9NPR2 832 aaPredicted RBP13.56□□□□□ -0.24
PTPRF-202ENST00000372405 DYRK4Q9NR20 520 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 SERGEFQ9UGK8 458 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 EIF2B4Q9UI10 523 aaKnown RBP13.56□□□□□ -0.24
PTPRF-202ENST00000372405 SORCS3Q9UPU3 1222 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 CDYLQ9Y232 598 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 OARD1Q9Y530 152 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 MYO10Q9HD67 2058 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 CFAP73A6NFT4 308 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 TMEM202A6NGA9 273 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 C2CD4DB7Z1M9 353 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 SPECC1L-ADORA2AF8WAN1 911 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 FFAR2O15552 330 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 DCXO43602 365 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 SNX2O60749 519 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 CBSLP0DN79 551 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 NCF2P19878 526 aaPredicted RBP13.55□□□□□ -0.24
PTPRF-202ENST00000372405 MSH3P20585 1137 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 CALB2P22676 271 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 CBSP35520 551 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 CPA2P48052 419 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 LCP2Q13094 533 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 CST6Q15828 149 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 CRY1Q16526 586 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 TTLL9Q3SXZ7 439 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 IER5LQ5T953 404 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 AGBL4Q5VU57 503 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 METTL21CQ5VZV1 264 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 KIAA1211LQ6NV74 962 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 NUDT18Q6ZVK8 323 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 PDPRQ8NCN5 879 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 NUS1Q96E22 293 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 KCNA7Q96RP8 456 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 FAM126AQ9BYI3 521 aaPredicted RBP13.55□□□□□ -0.24
PTPRF-202ENST00000372405 ZNF385DQ9H6B1 395 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 SLC40A1Q9NP59 571 aa13.55□□□□□ -0.24
PTPRF-202ENST00000372405 CFAP99D6REC4 459 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 TAPBPO15533 448 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 RASSF9O75901 435 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 AP2A2O94973 939 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 FGF4P08620 206 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 PTPN4P29074 926 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 COPAP53621 1224 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 INHBCP55103 352 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 HSPA14Q0VDF9 509 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 LDLRAP1Q5SW96 308 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 RINLQ6ZS11 566 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 FRA10AC1Q70Z53 315 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 ZNF765Q7L2R6 523 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 TRIM74Q86UV6 250 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 FAR2Q96K12 515 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 ASB2Q96Q27 587 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 TUBB6Q9BUF5 446 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 CCDC28BQ9BUN5 200 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 PTBP2Q9UKA9 531 aaKnown RBP13.54□□□□□ -0.24
PTPRF-202ENST00000372405 TMCO1Q9UM00 188 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 DNAJC15Q9Y5T4 150 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 NUMA1Q14980 2115 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 TRPC5OSA6NMA1 111 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 H0YHG0 523 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 TSPAN6O43657 245 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 NUAK1O60285 661 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 ADAM23O75077 832 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 GUCA1CO95843 209 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 EGFP01133 1207 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 ESRRAP11474 423 aaPredicted RBP13.54□□□□□ -0.24
PTPRF-202ENST00000372405 DPTQ07507 201 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 TMEM115Q12893 351 aaPredicted RBP13.54□□□□□ -0.24
PTPRF-202ENST00000372405 BOP1Q14137 746 aaKnown RBP13.54□□□□□ -0.24
PTPRF-202ENST00000372405 PCBP2Q15366 365 aaKnown RBP eCLIP13.54□□□□□ -0.24
PTPRF-202ENST00000372405 TBCCQ15814 346 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 TMEM196Q5HYL7 178 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 FAM46CQ5VWP2 391 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 KANK2Q63ZY3 851 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 MBOAT1Q6ZNC8 495 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 ACAD11Q709F0 780 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 SYVN1Q86TM6 617 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 SUGP1Q8IWZ8 645 aaKnown RBP13.54□□□□□ -0.24
PTPRF-202ENST00000372405 CLYBLQ8N0X4 340 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 RAB7BQ96AH8 199 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 C3orf30Q96M34 536 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 FAM161BQ96MY7 647 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 TBC1D10AQ9BXI6 508 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 TUBB1Q9H4B7 451 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 HEBP1Q9NRV9 189 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 TAS2R1Q9NYW7 299 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 TAGLN3Q9UI15 199 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 PTGDR2Q9Y5Y4 395 aa13.54□□□□□ -0.24
PTPRF-202ENST00000372405 ZFC3H1O60293 1989 aaKnown RBP13.54□□□□□ -0.24
PTPRF-202ENST00000372405 EIF3FO00303 357 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-202ENST00000372405 AZIN1O14977 448 aa13.53□□□□□ -0.24
PTPRF-202ENST00000372405 RAD51BO15315 384 aa13.53□□□□□ -0.24
PTPRF-202ENST00000372405 LZTS3O60299 673 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-202ENST00000372405 HNRNPCL1O60812 293 aaKnown RBP13.53□□□□□ -0.24
PTPRF-202ENST00000372405 GPC4O75487 556 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms