RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 FAM136AQ96C01 138 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 DUSP23Q9BVJ7 150 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 CFAP54Q96N23 3096 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 TRBV23OR9-2A0A075B6M9 112 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 TM4SF5O14894 197 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 CBFA2T3O75081 653 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 NIPSNAP2O75323 286 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 FTH1P02794 183 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 ESR1P03372 595 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 ALPPL2P10696 532 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 PKMP14618 531 aaKnown RBP21.75■■□□□ 1.07
SHMT1-203ENST00000354098 VCLP18206 1134 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 CCR7P32248 378 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 STX2P32856 288 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 PMS2P54278 862 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 EFTUD2Q15029 972 aaKnown RBP eCLIP21.75■■□□□ 1.07
SHMT1-203ENST00000354098 BRD3Q15059 726 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 METRNLQ641Q3 311 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 ZNF449Q6P9G9 518 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 STRA8Q7Z7C7 330 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 PIP4P1Q86T03 277 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 SPNS2Q8IVW8 549 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 NAGSQ8N159 534 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 ZDHHC1Q8WTX9 485 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 ELMO1Q92556 727 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 GALPQ9UBC7 116 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 RABGEF1Q9UJ41 708 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 PCDHB1Q9Y5F3 818 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 C17orf113A0A1B0GUU1 675 aa21.74■■□□□ 1.07
SHMT1-203ENST00000354098 A6NCN8 305 aa21.74■■□□□ 1.07
SHMT1-203ENST00000354098 KCNJ13O60928 360 aa21.74■■□□□ 1.07
SHMT1-203ENST00000354098 IDSP22304 550 aa21.74■■□□□ 1.07
SHMT1-203ENST00000354098 RSPO4Q2I0M5 234 aaPredicted RBP21.74■■□□□ 1.07
SHMT1-203ENST00000354098 ZCCHC8Q6NZY4 707 aaKnown RBP21.74■■□□□ 1.07
SHMT1-203ENST00000354098 OGFOD3Q6PK18 319 aa21.74■■□□□ 1.07
SHMT1-203ENST00000354098 GALNT7Q86SF2 657 aa21.74■■□□□ 1.07
SHMT1-203ENST00000354098 ARID1BQ8NFD5 2236 aaPredicted RBP21.74■■□□□ 1.07
SHMT1-203ENST00000354098 UHMK1Q8TAS1 419 aaKnown RBP21.74■■□□□ 1.07
SHMT1-203ENST00000354098 HM13Q8TCT9 377 aa21.74■■□□□ 1.07
SHMT1-203ENST00000354098 CDKL2Q92772 493 aa21.74■■□□□ 1.07
SHMT1-203ENST00000354098 APOLD1Q96LR9 279 aa21.74■■□□□ 1.07
SHMT1-203ENST00000354098 NDNQ99608 321 aa21.74■■□□□ 1.07
SHMT1-203ENST00000354098 SCHIP1Q9P0W5 487 aaPredicted RBP21.74■■□□□ 1.07
SHMT1-203ENST00000354098 PSMD13Q9UNM6 376 aa21.74■■□□□ 1.07
SHMT1-203ENST00000354098 WDR37Q9Y2I8 494 aa21.74■■□□□ 1.07
SHMT1-203ENST00000354098 PIEZO1Q92508 2521 aa21.74■■□□□ 1.07
SHMT1-203ENST00000354098 SLC30A4O14863 429 aa21.73■■□□□ 1.07
SHMT1-203ENST00000354098 NOBOXO60393 691 aa21.73■■□□□ 1.07
SHMT1-203ENST00000354098 BRAFP15056 766 aa21.73■■□□□ 1.07
SHMT1-203ENST00000354098 PHBP35232 272 aa21.73■■□□□ 1.07
SHMT1-203ENST00000354098 CSE1LP55060 971 aaKnown RBP21.73■■□□□ 1.07
SHMT1-203ENST00000354098 BOP1Q14137 746 aaKnown RBP21.73■■□□□ 1.07
SHMT1-203ENST00000354098 INAVAQ3KP66 663 aa21.73■■□□□ 1.07
SHMT1-203ENST00000354098 SLC26A11Q86WA9 606 aa21.73■■□□□ 1.07
SHMT1-203ENST00000354098 CTAGE3PQ8IX95 158 aa21.73■■□□□ 1.07
SHMT1-203ENST00000354098 SLC35F3Q8IY50 421 aa21.73■■□□□ 1.07
SHMT1-203ENST00000354098 KYQ8NBH2 561 aa21.73■■□□□ 1.07
SHMT1-203ENST00000354098 BAHD1Q8TBE0 780 aaPredicted RBP21.73■■□□□ 1.07
SHMT1-203ENST00000354098 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.73■■□□□ 1.07
SHMT1-203ENST00000354098 ATXN7L3BQ96GX2 97 aa21.73■■□□□ 1.07
SHMT1-203ENST00000354098 COG4Q9H9E3 785 aa21.73■■□□□ 1.07
SHMT1-203ENST00000354098 CDV3Q9UKY7 258 aaKnown RBP21.73■■□□□ 1.07
SHMT1-203ENST00000354098 MED16Q9Y2X0 877 aa21.73■■□□□ 1.07
SHMT1-203ENST00000354098 PIKFYVEQ9Y2I7 2098 aa21.73■■□□□ 1.07
SHMT1-203ENST00000354098 LY6G6EA0A0G2JKS1 128 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 PDZK1P1A8MUH7 402 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 CHRM3P20309 590 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 PDHA2P29803 388 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 PREPP48147 710 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 CD151P48509 253 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 PROX2Q3B8N5 592 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 RBM20Q5T481 1227 aaKnown RBP21.72■■□□□ 1.07
SHMT1-203ENST00000354098 TRMT10CQ7L0Y3 403 aaKnown RBP21.72■■□□□ 1.07
SHMT1-203ENST00000354098 PPM1NQ8N819 430 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 FAM181AQ8N9Y4 354 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 DEFB124Q8NES8 71 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 GPR156Q8NFN8 814 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 MCMBPQ9BTE3 642 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 AARSD1Q9BTE6 412 aaKnown RBP21.72■■□□□ 1.07
SHMT1-203ENST00000354098 U3KQA8 63 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 ZFC3H1O60293 1989 aaKnown RBP21.72■■□□□ 1.07
SHMT1-203ENST00000354098 KLHL33A6NCF5 533 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 F8W8V4 182 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 FAM155BO75949 473 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 F3P13726 295 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 CLCA4Q14CN2 919 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 IYDQ6PHW0 289 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 ZC3HC1Q86WB0 502 aaKnown RBP21.72■■□□□ 1.07
SHMT1-203ENST00000354098 ACVR1CQ8NER5 493 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 SPDYE1Q8NFV5 336 aaPredicted RBP21.72■■□□□ 1.07
SHMT1-203ENST00000354098 CNDP2Q96KP4 475 aaKnown RBP21.72■■□□□ 1.07
SHMT1-203ENST00000354098 PANX3Q96QZ0 392 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 TSSK1BQ9BXA7 367 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 FUT8Q9BYC5 575 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 CCDC68Q9H2F9 335 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 EPB41L4BQ9H329 900 aa21.72■■□□□ 1.07
SHMT1-203ENST00000354098 SARS2Q9NP81 518 aaKnown RBP21.72■■□□□ 1.07
SHMT1-203ENST00000354098 SLC5A10A0PJK1 596 aa21.71■■□□□ 1.07
SHMT1-203ENST00000354098 H3BMM5 538 aa21.71■■□□□ 1.07
SHMT1-203ENST00000354098 RIPK2O43353 540 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms