RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 MRPS35P82673 323 aaKnown RBP6.77□□□□□ -1.33
SF3B1-201ENST00000335508 KLC1Q07866 573 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 GALNT1Q10472 559 aaPredicted RBP6.77□□□□□ -1.33
SF3B1-201ENST00000335508 SLC10A2Q12908 348 aaPredicted RBP6.77□□□□□ -1.33
SF3B1-201ENST00000335508 CHRNA6Q15825 494 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 LRRC70Q7Z2Q7 622 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 CYP4Z1Q86W10 505 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 CLEC4FQ8N1N0 589 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 ARRDC2Q8TBH0 407 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 DTX3LQ8TDB6 740 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 LRRN4Q8WUT4 740 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 NUS1Q96E22 293 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 MRGPRX2Q96LB1 330 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 APOLD1Q96LR9 279 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 CAB39LQ9H9S4 337 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 ADPRHL2Q9NX46 363 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 MTF2Q9Y483 593 aaPredicted RBP6.77□□□□□ -1.33
SF3B1-201ENST00000335508 COL5A3P25940 1745 aaPredicted RBP6.77□□□□□ -1.33
SF3B1-201ENST00000335508 GRID2O43424 1007 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 SLC22A3O75751 556 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 ALBP02768 609 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 PROCP04070 461 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 COX7A2P14406 83 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 TARSP26639 723 aaKnown RBP6.77□□□□□ -1.33
SF3B1-201ENST00000335508 SOAT1P35610 550 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 LRP8Q14114 963 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 USP39Q53GS9 565 aaKnown RBP6.77□□□□□ -1.33
SF3B1-201ENST00000335508 MTX3Q5HYI7 312 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 LRRC66Q68CR7 880 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 DNAJC9Q8WXX5 260 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 NAF1Q96HR8 494 aaKnown RBP6.77□□□□□ -1.33
SF3B1-201ENST00000335508 C17orf80Q9BSJ5 609 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 OR2AG1Q9H205 316 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 C3orf14Q9HBI5 128 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 DMTF1Q9Y222 760 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 PCDHGB3Q9Y5G1 929 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 CACNA1CQ13936 2221 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 SPAG17Q6Q759 2223 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 CACNG3O60359 315 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 ERN1O75460 977 aaKnown RBP6.77□□□□□ -1.33
SF3B1-201ENST00000335508 RABGGTBP53611 331 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 BTKQ06187 659 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 VPS26BQ4G0F5 336 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 TTC23Q5W5X9 447 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.77□□□□□ -1.33
SF3B1-201ENST00000335508 MFSD6LQ8IWD5 586 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 KIF2BQ8N4N8 673 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 RERGQ96A58 199 aaPredicted RBP6.77□□□□□ -1.33
SF3B1-201ENST00000335508 SPACA7Q96KW9 195 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 CDRT15Q96T59 188 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 ACAT2Q9BWD1 397 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 ATG10Q9H0Y0 220 aa6.77□□□□□ -1.33
SF3B1-201ENST00000335508 PNMA8BQ9ULN7 279 aaPredicted RBP6.77□□□□□ -1.33
SF3B1-201ENST00000335508 NDRG2Q9UN36 371 aaKnown RBP6.77□□□□□ -1.33
SF3B1-201ENST00000335508 TPST1O60507 370 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 NIPSNAP2O75323 286 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF217O75362 1048 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 LEFTY1O75610 366 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 CAPN1P07384 714 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 ATF6P18850 670 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 EEF1DP29692 281 aaKnown RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 CMPK1P30085 196 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 NTHL1P78549 312 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 SPIDRQ14159 915 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 ZNHIT3Q15649 155 aaPredicted RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 MED27Q6P2C8 311 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 TAF8Q7Z7C8 310 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 C10orf107Q8IVU9 208 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 NPAS3Q8IXF0 933 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 PLPP6Q8IY26 295 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 C2CD4AQ8NCU7 369 aaPredicted RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 TRPV3Q8NET8 790 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 FAM162AQ96A26 154 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 KLHDC7BQ96G42 594 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 METTL2AQ96IZ6 378 aaKnown RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 PPP1R36Q96LQ0 422 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 UNKQ9C0B0 810 aaKnown RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 NMUR2Q9GZQ4 415 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 SPAG4Q9NPE6 437 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 PADI4Q9UM07 663 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 CDC14AQ9UNH5 594 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 GPSM3Q9Y4H4 160 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 RREB1Q92766 1687 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 ZCWPW2A0A1B0GU75 182 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 CCDC154A6NI56 674 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 SLC16A5O15375 505 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 PDE9AO76083 593 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 CLDN7O95471 211 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 PCNAP12004 261 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 HSD3B1P14060 373 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 HSD3B2P26439 372 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 BUD31P41223 144 aaPredicted RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 NCALDP61601 193 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 RPL38P63173 70 aaKnown RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 ABATP80404 500 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 MRPS21P82921 87 aaKnown RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 NIPAL4Q0D2K0 466 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 RPA4Q13156 261 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 ADRM1Q16186 407 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 POM121L1PQ3SYA9 428 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms