RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 PIK3R6Q5UE93 754 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 ZDHHC24Q6UX98 284 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 SPPL2CQ8IUH8 684 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 PPM1MQ96MI6 270 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 GTF2IRD1Q9UHL9 959 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 MAN2B2Q9Y2E5 1009 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 A0A0G2JLL6 359 aaPredicted RBP18.92■□□□□ 0.62
UPF1-201ENST00000262803 FADS2P1A8MWK0 482 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 GATBO75879 557 aaKnown RBP18.92■□□□□ 0.62
UPF1-201ENST00000262803 OR4Q2P0C623 313 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 GDF10P55107 478 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 PRRT2Q7Z6L0 340 aaPredicted RBP18.92■□□□□ 0.62
UPF1-201ENST00000262803 SPATA22Q8NHS9 363 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 CD99L2Q8TCZ2 262 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 LPGAT1Q92604 370 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 TSSK3Q96PN8 268 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 TRIM2Q9C040 744 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 A0A1W2PQ72 361 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 B3GALT2O43825 422 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 PCCBP05166 539 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 FABP3P05413 133 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 MAPK12P53778 367 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 CYP4F2P78329 520 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 CYP4F3Q08477 520 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 C2orf80Q0P641 193 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 FSTL4Q6MZW2 842 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 DNASE1L2Q92874 299 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 NTPCRQ9BSD7 190 aaKnown RBP18.92■□□□□ 0.62
UPF1-201ENST00000262803 PCDHGA11Q9Y5H2 935 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 C3P01024 1663 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 OR5F1O95221 314 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 PRAMEF1O95521 474 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 PIGWQ7Z7B1 504 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 OR2T34Q8NGX1 318 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 OR2T3Q8NH03 318 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 ROPN1LQ96C74 230 aa18.92■□□□□ 0.62
UPF1-201ENST00000262803 GATA5Q9BWX5 397 aaPredicted RBP18.92■□□□□ 0.62
UPF1-201ENST00000262803 GNEQ9Y223 722 aaKnown RBP18.92■□□□□ 0.62
UPF1-201ENST00000262803 PRODHO43272 600 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 USP2O75604 605 aaPredicted RBP18.91■□□□□ 0.62
UPF1-201ENST00000262803 TSTD2Q5T7W7 516 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 TCEAL6Q6IPX3 200 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 PRR23CQ6ZRP0 262 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 LDB1Q86U70 411 aaPredicted RBP18.91■□□□□ 0.62
UPF1-201ENST00000262803 BANPQ8N9N5 519 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 POC5Q8NA72 575 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 ATAD1Q8NBU5 361 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 EMID1Q96A84 441 aaPredicted RBP18.91■□□□□ 0.62
UPF1-201ENST00000262803 ACDQ96AP0 544 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 TBATAQ96M53 351 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 DPEP3Q9H4B8 488 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 TIMM22Q9Y584 194 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 AGR2O95994 175 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 CYB5AP00167 134 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 RGS8P57771 180 aaPredicted RBP18.91■□□□□ 0.62
UPF1-201ENST00000262803 DLG1Q12959 904 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 GRB14Q14449 540 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 GPR33Q49SQ1 333 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 RALGPS1Q5JS13 557 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 GLYATQ6IB77 296 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 CLHC1Q8NHS4 586 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 PSMA8Q8TAA3 256 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 PCDH19Q8TAB3 1148 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 TWIST2Q8WVJ9 160 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 APOLD1Q96LR9 279 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 SPATA9Q9BWV2 254 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 ZFP37Q9Y6Q3 630 aaPredicted RBP18.91■□□□□ 0.62
UPF1-201ENST00000262803 CASRP41180 1078 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 SRP54P61011 504 aaKnown RBP18.91■□□□□ 0.62
UPF1-201ENST00000262803 SVOPLQ8N434 492 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 ZNF483Q8TF39 744 aaPredicted RBP18.91■□□□□ 0.62
UPF1-201ENST00000262803 ZNF384Q8TF68 577 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 RBM18Q96H35 190 aaKnown RBP18.91■□□□□ 0.62
UPF1-201ENST00000262803 SLC38A3Q99624 504 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 TCF25Q9BQ70 676 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 U3KQV3 271 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 CAPN14A8MX76 684 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 ANXA4P09525 319 aaPredicted RBP18.91■□□□□ 0.62
UPF1-201ENST00000262803 NR2C1P13056 603 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 CYP4B1P13584 511 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 CD247P20963 164 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 AP3S2P59780 193 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 ADGRG6Q86SQ4 1221 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 CPNE8Q86YQ8 564 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 NSMCE3Q96MG7 304 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 ETAA1Q9NY74 926 aa18.91■□□□□ 0.62
UPF1-201ENST00000262803 TULP2O00295 520 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 NPHS1O60500 1241 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 KCNA5P22460 613 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 ITPKAP23677 461 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 IL12BP29460 328 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 ZNF311Q5JNZ3 666 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 VARS2Q5ST30 1063 aaKnown RBP18.9■□□□□ 0.62
UPF1-201ENST00000262803 KREMEN2Q8NCW0 462 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 LENG1Q96BZ8 264 aaPredicted RBP18.9■□□□□ 0.62
UPF1-201ENST00000262803 CADM1Q9BY67 442 aaKnown RBP18.9■□□□□ 0.62
UPF1-201ENST00000262803 ZDHHC18Q9NUE0 388 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 GPC6Q9Y625 555 aaPredicted RBP18.9■□□□□ 0.62
UPF1-201ENST00000262803 TREHO43280 583 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 IFNA6P05013 189 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms