RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 AARS2Q5JTZ9 985 aaKnown RBP20.34■□□□□ 0.85
CLN3-240ENST00000631023 BEND7Q8N7W2 519 aaPredicted RBP20.34■□□□□ 0.85
CLN3-240ENST00000631023 OR2L2Q8NH16 312 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 GATA6Q92908 595 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.34■□□□□ 0.85
CLN3-240ENST00000631023 CPNE7Q9UBL6 633 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 ACACAQ13085 2346 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 A0A1W2PQM1 296 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 F8W8V4 182 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 DNALI1O14645 258 aaPredicted RBP20.34■□□□□ 0.85
CLN3-240ENST00000631023 AP2A2O94973 939 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 NMBRP28336 390 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 OR1D5P58170 312 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 NFE2L1Q14494 772 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 ISXQ2M1V0 245 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 CHCHD2P9Q5T1J5 151 aaPredicted RBP20.34■□□□□ 0.85
CLN3-240ENST00000631023 RNASEH2BQ5TBB1 312 aaKnown RBP20.34■□□□□ 0.85
CLN3-240ENST00000631023 UNQ6494/PRO21346Q6UXR6 183 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 PACS1Q6VY07 963 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 TRIM48Q8IWZ4 208 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 C16orf45Q96MC5 204 aaPredicted RBP20.34■□□□□ 0.85
CLN3-240ENST00000631023 SERPINB12Q96P63 405 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 CATSPERZQ9NTU4 200 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 KCNK4Q9NYG8 393 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 ACSL5Q9ULC5 683 aa20.34■□□□□ 0.85
CLN3-240ENST00000631023 C17orf113A0A1B0GUU1 675 aa20.33■□□□□ 0.84
CLN3-240ENST00000631023 TRABD2BA6NFA1 517 aa20.33■□□□□ 0.84
CLN3-240ENST00000631023 TMX2-CTNND1H3BSU7 103 aa20.33■□□□□ 0.84
CLN3-240ENST00000631023 SGTAO43765 313 aa20.33■□□□□ 0.84
CLN3-240ENST00000631023 VIPP01282 170 aa20.33■□□□□ 0.84
CLN3-240ENST00000631023 GSTM1P09488 218 aa20.33■□□□□ 0.84
CLN3-240ENST00000631023 PAMP19021 973 aa20.33■□□□□ 0.84
CLN3-240ENST00000631023 DRG2P55039 364 aaKnown RBP20.33■□□□□ 0.84
CLN3-240ENST00000631023 GSTM4Q03013 218 aa20.33■□□□□ 0.84
CLN3-240ENST00000631023 CAMK2BQ13554 666 aa20.33■□□□□ 0.84
CLN3-240ENST00000631023 CLPPQ16740 277 aaPredicted RBP20.33■□□□□ 0.84
CLN3-240ENST00000631023 METRNLQ641Q3 311 aa20.33■□□□□ 0.84
CLN3-240ENST00000631023 HOOK3Q86VS8 718 aa20.33■□□□□ 0.84
CLN3-240ENST00000631023 JAMLQ86YT9 394 aa20.33■□□□□ 0.84
CLN3-240ENST00000631023 CCM2Q9BSQ5 444 aa20.33■□□□□ 0.84
CLN3-240ENST00000631023 D6RAR5 112 aa20.32■□□□□ 0.84
CLN3-240ENST00000631023 CD3EAPO15446 510 aaKnown RBP20.32■□□□□ 0.84
CLN3-240ENST00000631023 B4GAT1O43505 415 aa20.32■□□□□ 0.84
CLN3-240ENST00000631023 AMZ1Q400G9 498 aa20.32■□□□□ 0.84
CLN3-240ENST00000631023 IZUMO3Q5VZ72 239 aa20.32■□□□□ 0.84
CLN3-240ENST00000631023 ZNF449Q6P9G9 518 aa20.32■□□□□ 0.84
CLN3-240ENST00000631023 CLDN19Q8N6F1 224 aa20.32■□□□□ 0.84
CLN3-240ENST00000631023 SPATA4Q8NEY3 305 aa20.32■□□□□ 0.84
CLN3-240ENST00000631023 HM13Q8TCT9 377 aa20.32■□□□□ 0.84
CLN3-240ENST00000631023 NAT14Q8WUY8 206 aa20.32■□□□□ 0.84
CLN3-240ENST00000631023 MFSD3Q96ES6 412 aa20.32■□□□□ 0.84
CLN3-240ENST00000631023 CCDC97Q96F63 343 aaPredicted RBP20.32■□□□□ 0.84
CLN3-240ENST00000631023 AHCYL2Q96HN2 611 aaKnown RBP20.32■□□□□ 0.84
CLN3-240ENST00000631023 KRT12Q99456 494 aa20.32■□□□□ 0.84
CLN3-240ENST00000631023 NRSN2Q9GZP1 204 aa20.32■□□□□ 0.84
CLN3-240ENST00000631023 SCHIP1Q9P0W5 487 aaPredicted RBP20.32■□□□□ 0.84
CLN3-240ENST00000631023 MAP1BP46821 2468 aaKnown RBP20.32■□□□□ 0.84
CLN3-240ENST00000631023 SMAPO00193 183 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 TTI1O43156 1089 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 VAPBO95292 243 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 CPNE6O95741 557 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 TUBB4AP04350 444 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 BRAFP15056 766 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 PPM1FP49593 454 aaPredicted RBP20.31■□□□□ 0.84
CLN3-240ENST00000631023 TTPAP49638 278 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 UBE2IP63279 158 aaKnown RBP20.31■□□□□ 0.84
CLN3-240ENST00000631023 GPLD1P80108 840 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 FAM83HQ6ZRV2 1179 aaPredicted RBP20.31■□□□□ 0.84
CLN3-240ENST00000631023 MICALCLQ6ZW33 695 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 PIM3Q86V86 326 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 CFAP206Q8IYR0 622 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 MPP5Q8N3R9 675 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 OR10G6Q8NH81 332 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 CXorf40BQ96DE9 158 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 TMEM74Q96NL1 305 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 DPYSL5Q9BPU6 564 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 TMEM121BQ9BXQ6 578 aaPredicted RBP20.31■□□□□ 0.84
CLN3-240ENST00000631023 POT1Q9NUX5 634 aa20.31■□□□□ 0.84
CLN3-240ENST00000631023 ZNF624Q9P2J8 865 aaPredicted RBP20.31■□□□□ 0.84
CLN3-240ENST00000631023 FAM237BA0A1B0GVD1 139 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 TMEM8BA6NDV4 472 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 C1QTNF9BB2RNN3 333 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 CASC3O15234 703 aaKnown RBP20.3■□□□□ 0.84
CLN3-240ENST00000631023 OR56A5P0C7T3 313 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 C1QTNF9P0C862 333 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 IVDP26440 423 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 SLC19A1P41440 591 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 MAGEA3P43357 314 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 MORF4L2Q15014 288 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 MAP9Q49MG5 647 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 CES3Q6UWW8 571 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 MAATS1Q7Z4T9 603 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 SDCCAG8Q86SQ7 713 aaPredicted RBP20.3■□□□□ 0.84
CLN3-240ENST00000631023 RBM12BQ8IXT5 1001 aaKnown RBP20.3■□□□□ 0.84
CLN3-240ENST00000631023 OTUD6BQ8N6M0 293 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 NXPE2Q96DL1 559 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 UCK1Q9HA47 277 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 FAM8A1Q9UBU6 413 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 ATXN7L1Q9ULK2 861 aaPredicted RBP20.3■□□□□ 0.84
CLN3-240ENST00000631023 WDR37Q9Y2I8 494 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms