RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SLC39A3Q9BRY0 314 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 EI24O14681 340 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 HLA-DQA2P01906 255 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 OGNP20774 298 aaKnown RBP13.86□□□□□ -0.19
CPSF1-212ENST00000616140 RCVRNP35243 200 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 EGFLAMQ63HQ2 1017 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 PHTF2Q8N3S3 785 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 CSGALNACT1Q8TDX6 532 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 SLC13A3Q8WWT9 602 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 AP2M1Q96CW1 435 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 TUBGCP5Q96RT8 1024 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 HAPLN3Q96S86 360 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 IFT80Q9P2H3 777 aaPredicted RBP13.86□□□□□ -0.19
CPSF1-212ENST00000616140 ARL5AQ9Y689 179 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 SLIT2O94813 1529 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 UBR1Q8IWV7 1749 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 LOC110117498-PIK3R3F6TDL0 507 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 ATG13O75143 517 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 SCELO95171 688 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 HLA-DQB2P05538 268 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 SCNN1AP37088 669 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 SLC18A2Q05940 514 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 SULT2A1Q06520 285 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 ARHGAP1Q07960 439 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 NDUFAF6Q330K2 333 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 TCF25Q9BQ70 676 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 FEM1AQ9BSK4 669 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 FAM53CQ9NYF3 392 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 ENPP3O14638 875 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 KLF11O14901 512 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 HCRTO43612 131 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 DLX3O60479 287 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 TULP3O75386 442 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 H6PDO95479 791 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 GLUD1P00367 558 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 AHSGP02765 367 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 ASLP04424 464 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 AMD1P17707 334 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 CAPGP40121 348 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 YAP1P46937 504 aaKnown RBP13.86□□□□□ -0.19
CPSF1-212ENST00000616140 CCT3P49368 545 aaKnown RBP13.86□□□□□ -0.19
CPSF1-212ENST00000616140 AP1S1P61966 158 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 QPRTQ15274 297 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 GPR65Q8IYL9 337 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 LIX1Q8N485 282 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 ZNF655Q8N720 491 aaPredicted RBP13.86□□□□□ -0.19
CPSF1-212ENST00000616140 CNTN3Q9P232 1028 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 CD84Q9UIB8 345 aa13.86□□□□□ -0.19
CPSF1-212ENST00000616140 MED1Q15648 1581 aaPredicted RBP13.85□□□□□ -0.19
CPSF1-212ENST00000616140 PTPRJQ12913 1337 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 A0A0G2JLL6 359 aaPredicted RBP13.85□□□□□ -0.19
CPSF1-212ENST00000616140 TNFRSF11BO00300 401 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 GABRDO14764 452 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 PTPN5P54829 565 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 CCNYL2Q5T2Q4 361 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 KIAA1324Q6UXG2 1013 aaKnown RBP13.85□□□□□ -0.19
CPSF1-212ENST00000616140 PRRT2Q7Z6L0 340 aaPredicted RBP13.85□□□□□ -0.19
CPSF1-212ENST00000616140 ZC3HC1Q86WB0 502 aaKnown RBP13.85□□□□□ -0.19
CPSF1-212ENST00000616140 OR8D1Q8WZ84 308 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 BORCS6Q96GS4 357 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 SIGLEC10Q96LC7 697 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 EQTNQ9NQ60 294 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 SIX4Q9UIU6 781 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 MAP4K5Q9Y4K4 846 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 FAM47E-STBD1D6RA91 191 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 hCG_2039718K7EN88 272 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 GRM6O15303 877 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 DNAJA2O60884 412 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 FGBP02675 491 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 SEMG2Q02383 582 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 CCNIQ14094 377 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 ATXN7L2Q5T6C5 722 aaPredicted RBP13.85□□□□□ -0.19
CPSF1-212ENST00000616140 ZC3H3Q8IXZ2 948 aaKnown RBP13.85□□□□□ -0.19
CPSF1-212ENST00000616140 ARL14EPQ8N8R7 260 aaPredicted RBP13.85□□□□□ -0.19
CPSF1-212ENST00000616140 DEFB118Q96PH6 123 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 BCO2Q9BYV7 579 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 C1orf109Q9NX04 203 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 PTTG2Q9NZH5 202 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 PDE10AQ9Y233 779 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 SIGLEC1Q9BZZ2 1709 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 A8MT66 165 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 NIPSNAP2O75323 286 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 FABP3P05413 133 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 MTHFD1P11586 935 aaKnown RBP13.85□□□□□ -0.19
CPSF1-212ENST00000616140 SELPP16109 830 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 ITGAXP20702 1163 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 SLC7A1P30825 629 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 NOGQ13253 232 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 FAM46CQ5VWP2 391 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 FERD3LQ96RJ6 166 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 CYP2S1Q96SQ9 504 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 EBPLQ9BY08 206 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 SUCOQ9UBS9 1254 aaKnown RBP13.85□□□□□ -0.19
CPSF1-212ENST00000616140 DNAJB4Q9UDY4 337 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 CPQQ9Y646 472 aa13.85□□□□□ -0.19
CPSF1-212ENST00000616140 SYN3O14994 580 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 UGT2B17O75795 530 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 ZNF697Q5TEC3 545 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 AMIGO3Q86WK7 504 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 DBF4BQ8NFT6 615 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms