RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 GALNT3Q14435 633 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 PDK1Q15118 436 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 RAD9BQ6WBX8 426 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 SPOCD1Q6ZMY3 1216 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 ZNF547Q8IVP9 402 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 UBXN4Q92575 508 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 RSC1A1Q92681 617 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 CXorf40BQ96DE9 158 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 ELMO2Q96JJ3 720 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 AGAP3Q96P47 875 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 VPS35Q96QK1 796 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 GPR63Q9BZJ6 419 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 TWSG1Q9GZX9 223 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 LRRC4CQ9HCJ2 640 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 SHOC2Q9UQ13 582 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 DNAJC16Q9Y2G8 782 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 ZNF711Q9Y462 761 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 EPN1Q9Y6I3 576 aaPredicted RBP12.28□□□□□ -0.44
TRIM28-212ENST00000597995 DUSP10Q9Y6W6 482 aa12.28□□□□□ -0.44
TRIM28-212ENST00000597995 SPTBN1Q01082 2364 aaKnown RBP12.28□□□□□ -0.44
TRIM28-212ENST00000597995 SPTAN1Q13813 2472 aaKnown RBP12.28□□□□□ -0.44
TRIM28-212ENST00000597995 hCG_1818297A0A087WSY0 165 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 BLACEA4D250 179 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 CST8O60676 142 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 VPS4BO75351 444 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 BPIP17213 487 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 PTPN3P26045 913 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 RPL10P27635 214 aaKnown RBP12.27□□□□□ -0.45
TRIM28-212ENST00000597995 CD68P34810 354 aaPredicted RBP12.27□□□□□ -0.45
TRIM28-212ENST00000597995 NR2C2P49116 596 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 CDK18Q07002 472 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 WASHC5Q12768 1159 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 SEMA5AQ13591 1074 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 PRKD1Q15139 912 aaPredicted RBP12.27□□□□□ -0.45
TRIM28-212ENST00000597995 SEPT7Q16181 437 aaKnown RBP12.27□□□□□ -0.45
TRIM28-212ENST00000597995 PLA2G4EQ3MJ16 856 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 C4orf17Q53FE4 359 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 TEX44Q53QW1 395 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 KAZNQ674X7 775 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 C11orf63Q6NUN7 778 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 KLHL35Q6PF15 583 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 FAM92BQ6ZTR7 304 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 C11orf96Q7Z7L8 435 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 NT5DC3Q86UY8 548 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 KATNAL2Q8IYT4 538 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 GALNT11Q8NCW6 608 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 SPATA22Q8NHS9 363 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 DTX3LQ8TDB6 740 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 BRSK1Q8TDC3 778 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 CT55Q8WUE5 264 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 THAP4Q8WY91 577 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 SLC41A2Q96JW4 573 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 GPR87Q9BY21 358 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 LACRTQ9GZZ8 138 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 SLC25A51Q9H1U9 297 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 RARRES3Q9UL19 164 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 VPS4AQ9UN37 437 aa12.27□□□□□ -0.45
TRIM28-212ENST00000597995 ICE1Q9Y2F5 2266 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 OR52A4PA6NMU1 304 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 PPP1R12AO14974 1030 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-212ENST00000597995 MTX2O75431 263 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 NDST3O95803 873 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 MT-CYBP00156 380 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-212ENST00000597995 PIRTP0C851 137 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 CYLC1P35663 651 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-212ENST00000597995 HALP42357 657 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 ACY1Q03154 408 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 DMPKQ09013 629 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 TMEM115Q12893 351 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-212ENST00000597995 TUBB3Q13509 450 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 UGT8Q16880 541 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 KHDC1Q4VXA5 237 aaKnown RBP12.26□□□□□ -0.45
TRIM28-212ENST00000597995 TFDP3Q5H9I0 405 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 CCDC70Q6NSX1 233 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 IRGCQ6NXR0 463 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 TMEM135Q86UB9 458 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 KMT5CQ86Y97 462 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 TMEM139Q8IV31 216 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 SIDT2Q8NBJ9 832 aaKnown RBP12.26□□□□□ -0.45
TRIM28-212ENST00000597995 RNF31Q96EP0 1072 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 TEKT5Q96M29 485 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 ACTL8Q9H568 366 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 GLOD4Q9HC38 313 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 TMPRSS11EQ9UL52 423 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 WDR37Q9Y2I8 494 aa12.26□□□□□ -0.45
TRIM28-212ENST00000597995 DNMT3AQ9Y6K1 912 aaPredicted RBP12.26□□□□□ -0.45
TRIM28-212ENST00000597995 IGHV5-51A0A0C4DH38 117 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 A0A0U1RQJ8 604 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 ZRANB2O95218 330 aaKnown RBP eCLIP12.25□□□□□ -0.45
TRIM28-212ENST00000597995 TIAF1O95411 115 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 PDGFAP04085 211 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 FOLR1P15328 257 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 PTPN4P29074 926 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 HMGCLP35914 325 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 DRG2P55039 364 aaKnown RBP12.25□□□□□ -0.45
TRIM28-212ENST00000597995 RPS15P62841 145 aaKnown RBP12.25□□□□□ -0.45
TRIM28-212ENST00000597995 GTF2H3Q13889 308 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 TFDP2Q14188 446 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 SPA17Q15506 151 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 ATP13A5Q4VNC0 1218 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms