RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 THAP3Q8WTV1 239 aaPredicted RBP15.76■□□□□ 0.11
VPS53-218ENST00000575207 TMEM158Q8WZ71 300 aa15.76■□□□□ 0.11
VPS53-218ENST00000575207 VKORC1Q9BQB6 163 aa15.76■□□□□ 0.11
VPS53-218ENST00000575207 GTPBP4Q9BZE4 634 aaKnown RBP15.76■□□□□ 0.11
VPS53-218ENST00000575207 OSGEPL1Q9H4B0 414 aa15.76■□□□□ 0.11
VPS53-218ENST00000575207 SYTL2Q9HCH5 934 aa15.76■□□□□ 0.11
VPS53-218ENST00000575207 GPATCH2LQ9NWQ4 482 aa15.76■□□□□ 0.11
VPS53-218ENST00000575207 CNOT6Q9ULM6 557 aaKnown RBP15.76■□□□□ 0.11
VPS53-218ENST00000575207 CCDC66A2RUB6 948 aa15.75■□□□□ 0.11
VPS53-218ENST00000575207 SLC16A3O15427 465 aaKnown RBP15.75■□□□□ 0.11
VPS53-218ENST00000575207 NUAK1O60285 661 aa15.75■□□□□ 0.11
VPS53-218ENST00000575207 CNOT3O75175 753 aaKnown RBP15.75■□□□□ 0.11
VPS53-218ENST00000575207 ALOX12BO75342 701 aa15.75■□□□□ 0.11
VPS53-218ENST00000575207 ZRANB2O95218 330 aaKnown RBP eCLIP15.75■□□□□ 0.11
VPS53-218ENST00000575207 MSL3P1P0C860 447 aa15.75■□□□□ 0.11
VPS53-218ENST00000575207 FLT3P36888 993 aa15.75■□□□□ 0.11
VPS53-218ENST00000575207 SCNN1AP37088 669 aa15.75■□□□□ 0.11
VPS53-218ENST00000575207 TSPAN33Q86UF1 283 aa15.75■□□□□ 0.11
VPS53-218ENST00000575207 TEKT4Q8WW24 435 aa15.75■□□□□ 0.11
VPS53-218ENST00000575207 SCRN2Q96FV2 425 aa15.75■□□□□ 0.11
VPS53-218ENST00000575207 MCCC1Q96RQ3 725 aaPredicted RBP15.75■□□□□ 0.11
VPS53-218ENST00000575207 MAGEB5Q9BZ81 275 aa15.75■□□□□ 0.11
VPS53-218ENST00000575207 CARD9Q9H257 536 aa15.75■□□□□ 0.11
VPS53-218ENST00000575207 PCDHGC3Q9UN70 934 aa15.75■□□□□ 0.11
VPS53-218ENST00000575207 ADGRG1Q9Y653 693 aa15.75■□□□□ 0.11
VPS53-218ENST00000575207 DYTNA2CJ06 578 aa15.74■□□□□ 0.11
VPS53-218ENST00000575207 OR52A4PA6NMU1 304 aa15.74■□□□□ 0.11
VPS53-218ENST00000575207 J3KR12 359 aa15.74■□□□□ 0.11
VPS53-218ENST00000575207 SOCS6O14544 535 aa15.74■□□□□ 0.11
VPS53-218ENST00000575207 ADAM10O14672 748 aa15.74■□□□□ 0.11
VPS53-218ENST00000575207 ACTN4O43707 911 aaKnown RBP15.74■□□□□ 0.11
VPS53-218ENST00000575207 PRAMEF11O60813 436 aa15.74■□□□□ 0.11
VPS53-218ENST00000575207 HBQ1P09105 142 aa15.74■□□□□ 0.11
VPS53-218ENST00000575207 AP1S1P61966 158 aa15.74■□□□□ 0.11
VPS53-218ENST00000575207 TRNP1Q6NT89 227 aa15.74■□□□□ 0.11
VPS53-218ENST00000575207 WASH2PQ6VEQ5 465 aa15.74■□□□□ 0.11
VPS53-218ENST00000575207 UMODL1-AS1Q8N2C9 162 aa15.74■□□□□ 0.11
VPS53-218ENST00000575207 SIMC1Q8NDZ2 872 aa15.74■□□□□ 0.11
VPS53-218ENST00000575207 HAS2Q92819 552 aa15.74■□□□□ 0.11
VPS53-218ENST00000575207 TLR10Q9BXR5 811 aa15.74■□□□□ 0.11
VPS53-218ENST00000575207 SLC7A5P2Q9GIP4 190 aa15.74■□□□□ 0.11
VPS53-218ENST00000575207 ARMCX3Q9UH62 379 aaPredicted RBP15.74■□□□□ 0.11
VPS53-218ENST00000575207 GPN3Q9UHW5 284 aaPredicted RBP15.74■□□□□ 0.11
VPS53-218ENST00000575207 PDZK1P1A8MUH7 402 aa15.73■□□□□ 0.11
VPS53-218ENST00000575207 TOXO94900 526 aa15.73■□□□□ 0.11
VPS53-218ENST00000575207 MYL1P05976 194 aa15.73■□□□□ 0.11
VPS53-218ENST00000575207 MMP11P24347 488 aa15.73■□□□□ 0.11
VPS53-218ENST00000575207 FOXL2P58012 376 aa15.73■□□□□ 0.11
VPS53-218ENST00000575207 MRPL14Q6P1L8 145 aaKnown RBP15.73■□□□□ 0.11
VPS53-218ENST00000575207 TMEM151BQ8IW70 566 aa15.73■□□□□ 0.11
VPS53-218ENST00000575207 TTC30BQ8N4P2 665 aa15.73■□□□□ 0.11
VPS53-218ENST00000575207 C3orf20Q8ND61 904 aa15.73■□□□□ 0.11
VPS53-218ENST00000575207 AGAP11Q8TF27 550 aa15.73■□□□□ 0.11
VPS53-218ENST00000575207 CCDC47Q96A33 483 aaKnown RBP15.73■□□□□ 0.11
VPS53-218ENST00000575207 CXorf40BQ96DE9 158 aa15.73■□□□□ 0.11
VPS53-218ENST00000575207 THOC3Q96J01 351 aaKnown RBP15.73■□□□□ 0.11
VPS53-218ENST00000575207 CFAP57Q96MR6 1250 aa15.73■□□□□ 0.11
VPS53-218ENST00000575207 CLEC4MQ9H2X3 399 aaPredicted RBP15.73■□□□□ 0.11
VPS53-218ENST00000575207 IL17CQ9P0M4 197 aa15.73■□□□□ 0.11
VPS53-218ENST00000575207 MEGF8Q7Z7M0 2845 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.72■□□□□ 0.11
VPS53-218ENST00000575207 OR5K3A6NET4 321 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 TMEM150CB9EJG8 249 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 ZNF749O43361 778 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 SOCS5O75159 536 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 CRLF1O75462 422 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 PALMO75781 387 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 CPP00450 1065 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 CBSLP0DN79 551 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 CBSP35520 551 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 SCNN1BP51168 640 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 CACNG1Q06432 222 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 CETN1Q12798 172 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 PTPRRQ15256 657 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 KRTCAP3Q53RY4 240 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 AGAP9Q5VTM2 703 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 PAMR1Q6UXH9 720 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 LILRB4Q8NHJ6 448 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 RIOK2Q9BVS4 552 aaKnown RBP15.72■□□□□ 0.11
VPS53-218ENST00000575207 UPF2Q9HAU5 1272 aaKnown RBP15.72■□□□□ 0.11
VPS53-218ENST00000575207 PLCB1Q9NQ66 1216 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 SOHLH2Q9NX45 425 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 LRFN1Q9P244 771 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 SLC23A2Q9UGH3 650 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 SERTAD3Q9UJW9 196 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 PPIL1Q9Y3C6 166 aa15.72■□□□□ 0.11
VPS53-218ENST00000575207 C17orf113A0A1B0GUU1 675 aa15.71■□□□□ 0.11
VPS53-218ENST00000575207 FAM237BA0A1B0GVD1 139 aa15.71■□□□□ 0.11
VPS53-218ENST00000575207 ZNF30P17039 623 aa15.71■□□□□ 0.11
VPS53-218ENST00000575207 PTSQ03393 145 aa15.71■□□□□ 0.11
VPS53-218ENST00000575207 SEPT7Q16181 437 aaKnown RBP15.71■□□□□ 0.11
VPS53-218ENST00000575207 RAB6CQ53S08 254 aa15.71■□□□□ 0.11
VPS53-218ENST00000575207 FAM102AQ5T9C2 384 aaPredicted RBP15.71■□□□□ 0.11
VPS53-218ENST00000575207 SHEQ5VZ18 495 aa15.71■□□□□ 0.11
VPS53-218ENST00000575207 RESP18Q5W5W9 173 aa15.71■□□□□ 0.11
VPS53-218ENST00000575207 DOLPP1Q86YN1 238 aa15.71■□□□□ 0.11
VPS53-218ENST00000575207 CPLX3Q8WVH0 158 aa15.71■□□□□ 0.11
VPS53-218ENST00000575207 GPR137Q96N19 417 aa15.71■□□□□ 0.11
VPS53-218ENST00000575207 RAB6CQ9H0N0 254 aa15.71■□□□□ 0.11
VPS53-218ENST00000575207 RASSF1Q9NS23 344 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms