RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 TECRLQ5HYJ1 363 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 TMEM31Q5JXX7 168 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 PLEKHS1Q5SXH7 462 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 ZYG11AQ6WRX3 759 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 RGS9BPQ6ZS82 235 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 ISCA2Q86U28 154 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 TRIM74Q86UV6 250 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 CPNE9Q8IYJ1 553 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 RHEBL1Q8TAI7 183 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 LRRC8CQ8TDW0 803 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 SREK1Q8WXA9 508 aaKnown RBP13.48□□□□□ -0.25
CCDC40-209ENST00000573474 ZNF75CPQ92670 426 aaPredicted RBP13.48□□□□□ -0.25
CCDC40-209ENST00000573474 EDAQ92838 391 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 KIAA1191Q96A73 305 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 LINGO1Q96FE5 620 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 TOE1Q96GM8 510 aaKnown RBP13.48□□□□□ -0.25
CCDC40-209ENST00000573474 CCM2Q9BSQ5 444 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 UNKQ9C0B0 810 aaKnown RBP13.48□□□□□ -0.25
CCDC40-209ENST00000573474 WSB2Q9NYS7 404 aaPredicted RBP13.48□□□□□ -0.25
CCDC40-209ENST00000573474 SIRPGQ9P1W8 387 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 CPSF2Q9P2I0 782 aaKnown RBP13.48□□□□□ -0.25
CCDC40-209ENST00000573474 ATXN10Q9UBB4 475 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 XPR1Q9UBH6 696 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 GPR34Q9UPC5 381 aa13.48□□□□□ -0.25
CCDC40-209ENST00000573474 TRPM6Q9BX84 2022 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 GMNCA6NCL1 334 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 G3V2L1 256 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 TK2O00142 265 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 EIF3FO00303 357 aaPredicted RBP13.47□□□□□ -0.25
CCDC40-209ENST00000573474 FPGTO14772 594 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 LATO43561 262 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 RRP9O43818 475 aaKnown RBP13.47□□□□□ -0.25
CCDC40-209ENST00000573474 HOXC4P09017 264 aaPredicted RBP13.47□□□□□ -0.25
CCDC40-209ENST00000573474 GSTM1P09488 218 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 SBK3P0C264 359 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 ENO3P13929 434 aaPredicted RBP13.47□□□□□ -0.25
CCDC40-209ENST00000573474 ZNF8P17098 575 aaPredicted RBP13.47□□□□□ -0.25
CCDC40-209ENST00000573474 TAC1P20366 129 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 ALDH3A1P30838 453 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 IGFALSP35858 605 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 CXCL12P48061 93 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 PRKAA2P54646 552 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 GSTM4Q03013 218 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 PCLAFQ15004 111 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 ACSBG2Q5FVE4 666 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 KIAA0895LQ68EN5 471 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 MAMSTRQ6ZN01 415 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 RAB3IL1Q8TBN0 382 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 STAG3L4Q8TBR4 150 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 ELMO1Q92556 727 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 FUBP1Q96AE4 644 aaKnown RBP13.47□□□□□ -0.25
CCDC40-209ENST00000573474 PTERQ96BW5 349 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 CHMP6Q96FZ7 201 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 APOOQ9BUR5 198 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 MECRQ9BV79 373 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 FAM126AQ9BYI3 521 aaPredicted RBP13.47□□□□□ -0.25
CCDC40-209ENST00000573474 EPN3Q9H201 632 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 ALG9Q9H6U8 611 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 MANSC1Q9H8J5 431 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 TMEM98Q9Y2Y6 226 aa13.47□□□□□ -0.25
CCDC40-209ENST00000573474 IGHV1OR15-9A0A0B4J2B8 117 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 TCP11X1B4DZS4 312 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 GPR89AB7ZAQ6 455 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 KLF11O14901 512 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 LILRB5O75023 590 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 VIMP08670 466 aaKnown RBP13.46□□□□□ -0.25
CCDC40-209ENST00000573474 GPR89BP0CG08 455 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 MYCLP1P12525 358 aaPredicted RBP13.46□□□□□ -0.25
CCDC40-209ENST00000573474 BGNP21810 368 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 KCNA4P22459 653 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 HNRNPA2B1P22626 353 aaKnown RBP13.46□□□□□ -0.25
CCDC40-209ENST00000573474 ATP5F1P24539 256 aaPredicted RBP13.46□□□□□ -0.25
CCDC40-209ENST00000573474 AKT2P31751 481 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 NUDT1P36639 197 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 CCR3P51677 355 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 GBX1Q14549 363 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 ATG16L1Q676U5 607 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 CYHR1Q6ZMK1 362 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 C10orf107Q8IVU9 208 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 MYO1HQ8N1T3 1032 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 BEND7Q8N7W2 519 aaPredicted RBP13.46□□□□□ -0.25
CCDC40-209ENST00000573474 PPP1R14CQ8TAE6 165 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 ASZ1Q8WWH4 475 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 CCDC126Q96EE4 140 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 LINC00615Q96LM1 132 aaPredicted RBP13.46□□□□□ -0.25
CCDC40-209ENST00000573474 NECAB3Q96P71 396 aaPredicted RBP13.46□□□□□ -0.25
CCDC40-209ENST00000573474 ZNF317Q96PQ6 595 aaPredicted RBP13.46□□□□□ -0.25
CCDC40-209ENST00000573474 LGR4Q9BXB1 951 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 GPR174Q9BXC1 333 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 TPSD1Q9BZJ3 242 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 C6orf106Q9H6K1 298 aaPredicted RBP13.46□□□□□ -0.25
CCDC40-209ENST00000573474 FZD3Q9NPG1 666 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 OXSMQ9NWU1 459 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 OR1A2Q9Y585 309 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 HS3ST3A1Q9Y663 406 aa13.46□□□□□ -0.25
CCDC40-209ENST00000573474 DNMT3AQ9Y6K1 912 aaPredicted RBP13.46□□□□□ -0.25
CCDC40-209ENST00000573474 C17orf113A0A1B0GUU1 675 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 NPEPPSL1A6NEC2 478 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 SYCE1LA8MT33 242 aa13.45□□□□□ -0.26
CCDC40-209ENST00000573474 CACNB4O00305 520 aaPredicted RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms