RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 CHST11Q9NPF2 352 aa11.49□□□□□ -0.57
CLK3-222ENST00000568232 PCMTD2Q9NV79 361 aa11.49□□□□□ -0.57
CLK3-222ENST00000568232 NAV3Q8IVL0 2385 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 TCRBV5S1A1TA0A578 114 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 LDB2O43679 373 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 KLF7O75840 302 aaPredicted RBP11.48□□□□□ -0.57
CLK3-222ENST00000568232 UCHL3P15374 230 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 FECHP22830 423 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 SPINT3P49223 89 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 EPHB1P54762 984 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 GSCP56915 257 aaPredicted RBP11.48□□□□□ -0.57
CLK3-222ENST00000568232 KCNK10P57789 538 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 FOXL2P58012 376 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 CDC16Q13042 620 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 NCF4Q15080 339 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 PPP6R3Q5H9R7 873 aaPredicted RBP11.48□□□□□ -0.57
CLK3-222ENST00000568232 ZNF677Q86XU0 584 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 KMT5CQ86Y97 462 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 ZNF547Q8IVP9 402 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 TMEM151BQ8IW70 566 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 RBM12BQ8IXT5 1001 aaKnown RBP11.48□□□□□ -0.57
CLK3-222ENST00000568232 NDUFAF2Q8N183 169 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 CCDC120Q96HB5 630 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 FER1L6-AS2Q96M78 137 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 PEBP4Q96S96 227 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 CNPY3Q9BT09 278 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 SNRNP25Q9BV90 132 aaKnown RBP11.48□□□□□ -0.57
CLK3-222ENST00000568232 TLR10Q9BXR5 811 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 PCSK1NQ9UHG2 260 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 CHKBQ9Y259 395 aa11.48□□□□□ -0.57
CLK3-222ENST00000568232 SVILO95425 2214 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 A0A1W2PQJ5 194 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 GOLGA6L4A6NEF3 574 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 TLCD2A6NGC4 264 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 C19orf84I3L1E1 186 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 CHUKO15111 745 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 KMOO15229 486 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 MAP3K7O43318 606 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 MAFKO60675 156 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 MTX2O75431 263 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 JRKO75564 520 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 IPO13O94829 963 aaKnown RBP11.47□□□□□ -0.57
CLK3-222ENST00000568232 SLC25A14O95258 325 aaPredicted RBP11.47□□□□□ -0.57
CLK3-222ENST00000568232 IDSP22304 550 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 MMP13P45452 471 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 NSFP46459 744 aaKnown RBP11.47□□□□□ -0.57
CLK3-222ENST00000568232 ITKQ08881 620 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 ERMARDQ5T6L9 678 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 DNAJC24Q6P3W2 148 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 ANKK1Q8NFD2 765 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 OR1L3Q8NH93 324 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 DNAJB14Q8TBM8 379 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 SLX1AQ9BQ83 275 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 STK33Q9BYT3 514 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 NDST4Q9H3R1 872 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 TRIM39Q9HCM9 518 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 NT5MQ9NPB1 228 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 ETNK2Q9NVF9 386 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 HRASLS2Q9NWW9 162 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 CWC15Q9P013 229 aaKnown RBP11.47□□□□□ -0.57
CLK3-222ENST00000568232 RWDD2AQ9UIY3 292 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 ABCA2Q9BZC7 2435 aa11.47□□□□□ -0.57
CLK3-222ENST00000568232 ZNF469Q96JG9 3925 aaPredicted RBP11.47□□□□□ -0.57
CLK3-222ENST00000568232 ANKHD1Q8IWZ3 2542 aaKnown RBP11.46□□□□□ -0.57
CLK3-222ENST00000568232 C1orf232A0A0U1RR37 186 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 CCDC78A2IDD5 438 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 OR5K3A6NET4 321 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 ZBTB11O95625 1053 aaPredicted RBP11.46□□□□□ -0.57
CLK3-222ENST00000568232 PRLP01236 227 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 SSTR2P30874 369 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 TSFMP43897 325 aaKnown RBP11.46□□□□□ -0.57
CLK3-222ENST00000568232 ARCN1P48444 511 aaKnown RBP11.46□□□□□ -0.57
CLK3-222ENST00000568232 DPYSQ14117 519 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 SSPNQ14714 243 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 PLCL1Q15111 1095 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 MAN2A1Q16706 1144 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 VWA3BQ502W6 1294 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 ZNF789Q5FWF6 425 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 RALGPS1Q5JS13 557 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 TMTC4Q5T4D3 741 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 MARC1Q5VT66 337 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 AGAP9Q5VTM2 703 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 MLIPQ5VWP3 458 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 ALS2CLQ60I27 953 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 WASH2PQ6VEQ5 465 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 LRRTM4Q86VH4 590 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 PHF13Q86YI8 300 aaPredicted RBP11.46□□□□□ -0.57
CLK3-222ENST00000568232 BBS5Q8N3I7 341 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 OR8K5Q8NH50 307 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 PPP4R1Q8TF05 950 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 EID2BQ96D98 161 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 CNDP1Q96KN2 507 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 TIMM29Q9BSF4 260 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 SPATA16Q9BXB7 569 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 ACTR5Q9H9F9 607 aaPredicted RBP11.46□□□□□ -0.57
CLK3-222ENST00000568232 SOHLH2Q9NX45 425 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 P4HTMQ9NXG6 502 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 MDC1Q14676 2089 aaKnown RBP11.46□□□□□ -0.57
CLK3-222ENST00000568232 PIKFYVEQ9Y2I7 2098 aa11.46□□□□□ -0.57
CLK3-222ENST00000568232 TRGV8A0A0C4DH27 118 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms