RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 PATE3B3GLJ2 98 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 TPP1O14773 563 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 LIN7AO14910 233 aaPredicted RBP9.09□□□□□ -0.95
LDLR-210ENST00000559340 AQP9O43315 295 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 PCDHGA12O60330 932 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 MTX2O75431 263 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 VPS26AO75436 327 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 POP7O75817 140 aaKnown RBP9.09□□□□□ -0.95
LDLR-210ENST00000559340 PIAS2O75928 621 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 KRT38O76015 456 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 TRIM16O95361 564 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 AHSGP02765 367 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 APOA4P06727 396 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 PRSS56P0CW18 603 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 MYBL2P10244 700 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 CHRM3P20309 590 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 CD9P21926 228 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 IDSP22304 550 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 CNTFP26441 200 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 ARHGAP8P85298 464 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 RPA4Q13156 261 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 SLC14A1Q13336 389 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 SLC29A2Q14542 456 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 SEMA3AQ14563 771 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 TTLL9Q3SXZ7 439 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 KBTBD12Q3ZCT8 623 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 AASDHQ4L235 1098 aaPredicted RBP9.09□□□□□ -0.95
LDLR-210ENST00000559340 PRRT3Q5FWE3 981 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 ZNF648Q5T619 568 aaPredicted RBP9.09□□□□□ -0.95
LDLR-210ENST00000559340 FAM45BPQ6NSW5 357 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 CRTC3Q6UUV7 619 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 LAYNQ6UX15 382 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 DET1Q7L5Y6 550 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 CHST15Q7LFX5 561 aaPredicted RBP9.09□□□□□ -0.95
LDLR-210ENST00000559340 TAF8Q7Z7C8 310 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 LDB1Q86U70 411 aaPredicted RBP9.09□□□□□ -0.95
LDLR-210ENST00000559340 DENND6AQ8IWF6 608 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 GSPT2Q8IYD1 628 aaKnown RBP9.09□□□□□ -0.95
LDLR-210ENST00000559340 UNC5BQ8IZJ1 945 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 MREGQ8N565 214 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 MINDY1Q8N5J2 469 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 AVL9Q8NBF6 648 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 OR2L2Q8NH16 312 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 FAM45AQ8TCE6 357 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 HM13Q8TCT9 377 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 LMX1AQ8TE12 382 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 ASZ1Q8WWH4 475 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 LPGAT1Q92604 370 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 TSPAN17Q96FV3 270 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 BOCQ9BWV1 1114 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 RHOJQ9H4E5 214 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 PLAC1Q9HBJ0 212 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 TMEM9BQ9NQ34 198 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 MRPL40Q9NQ50 206 aaKnown RBP9.09□□□□□ -0.95
LDLR-210ENST00000559340 FBXO6Q9NRD1 293 aaPredicted RBP9.09□□□□□ -0.95
LDLR-210ENST00000559340 SPATS2LQ9NUQ6 558 aaKnown RBP9.09□□□□□ -0.95
LDLR-210ENST00000559340 DLL3Q9NYJ7 618 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 TAS2R13Q9NYV9 303 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 IL1RAPL1Q9NZN1 696 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 KLHL42Q9P2K6 505 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 CRYL1Q9Y2S2 319 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 VWA7Q9Y334 891 aa9.09□□□□□ -0.95
LDLR-210ENST00000559340 LMO7DNF2Z398 122 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 POC1B-GALNT4F8VUJ3 575 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 GPR39O43194 453 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 OR1I1O60431 355 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 KRT37O76014 449 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 HAUS5O94927 633 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 ACP5P13686 325 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 HALP42357 657 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 CTSCP53634 463 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 MPP1Q00013 466 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 B4GALNT1Q00973 533 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 CTBSQ01459 385 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 POU4F1Q01851 419 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 BNC1Q01954 994 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 DMPKQ09013 629 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 IFFO1Q0D2I5 559 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 CCDC6Q16204 474 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 SYTL3Q4VX76 610 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 KHDC1Q4VXA5 237 aaKnown RBP9.08□□□□□ -0.96
LDLR-210ENST00000559340 ZNF542PQ5EBM4 170 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 PLEKHS1Q5SXH7 462 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 TPRG1LQ5T0D9 272 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 LRRC8EQ6NSJ5 796 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 CNSTQ6PJW8 725 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 PRR23CQ6ZRP0 262 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 OTOAQ7RTW8 1153 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 CCDC91Q7Z6B0 441 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 CFAP206Q8IYR0 622 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 CLDN19Q8N6F1 224 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 GPBAR1Q8TDU6 330 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 HNRNPLLQ8WVV9 542 aaKnown RBP9.08□□□□□ -0.96
LDLR-210ENST00000559340 ELMO1Q92556 727 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 INPP5DQ92835 1189 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 TMEM159Q96B96 161 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 PDXPQ96GD0 296 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 PKNOX2Q96KN3 472 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 RBBP8Q99708 897 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 AARSD1Q9BTE6 412 aaKnown RBP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms