RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 INSM1Q01101 510 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-228ENST00000557302 NFE2L1Q14494 772 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 SEMA3AQ14563 771 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 KIR2DS5Q14953 304 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 SEPT7Q16181 437 aaKnown RBP13.35□□□□□ -0.27
SHMT2-228ENST00000557302 BBS9Q3SYG4 887 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 ANKRD20A4Q4UJ75 823 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 AGAP9Q5VTM2 703 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 MRNIPQ6NTE8 343 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 WASH2PQ6VEQ5 465 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 TMPRSS7Q7RTY8 843 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 TMPRSS12Q86WS5 348 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 PDIK1LQ8N165 341 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 AGGF1Q8N302 714 aaeCLIP13.35□□□□□ -0.27
SHMT2-228ENST00000557302 CLDN19Q8N6F1 224 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 AVL9Q8NBF6 648 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 BBOF1Q8ND07 529 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 OR2L2Q8NH16 312 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 WDR48Q8TAF3 677 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 STAMBPL1Q96FJ0 436 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 LINC00615Q96LM1 132 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-228ENST00000557302 TRIM56Q9BRZ2 755 aaKnown RBP13.35□□□□□ -0.27
SHMT2-228ENST00000557302 SCNM1Q9BWG6 230 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 STN1Q9H668 368 aaKnown RBP13.35□□□□□ -0.27
SHMT2-228ENST00000557302 SARS2Q9NP81 518 aaKnown RBP13.35□□□□□ -0.27
SHMT2-228ENST00000557302 WASH6PQ9NQA3 447 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 MARCH4Q9P2E8 410 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-228ENST00000557302 FAM8A1Q9UBU6 413 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 RABGEF1Q9UJ41 708 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 ANGPTL2Q9UKU9 493 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 WASF3Q9UPY6 502 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 MRFAP1Q9Y605 127 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 RPS6KL1Q9Y6S9 549 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 FRYQ5TBA9 3013 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 F8W8V4 182 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 ZW10O43264 779 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 OR1I1O60431 355 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 USP1O94782 785 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 POLBP06746 335 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 PGAM1P18669 254 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 SPINK2P20155 84 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 ARNTP27540 789 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 RPL10P27635 214 aaKnown RBP13.34□□□□□ -0.27
SHMT2-228ENST00000557302 HALP42357 657 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 FASLGP48023 281 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 ARCN1P48444 511 aaKnown RBP13.34□□□□□ -0.27
SHMT2-228ENST00000557302 DRG2P55039 364 aaKnown RBP13.34□□□□□ -0.27
SHMT2-228ENST00000557302 ARL4CP56559 192 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 CLDN6P56747 220 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 DHX9Q08211 1270 aaKnown RBP13.34□□□□□ -0.27
SHMT2-228ENST00000557302 CALCOCO2Q13137 446 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 ABRAXAS1Q6UWZ7 409 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 FAM83HQ6ZRV2 1179 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-228ENST00000557302 ZNF438Q7Z4V0 828 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 SPRED1Q7Z699 444 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 SDCCAG8Q86SQ7 713 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-228ENST00000557302 TMEM135Q86UB9 458 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 SLC9B2Q86UD5 537 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 CCNJLQ8IV13 435 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 Q8N9G6 341 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-228ENST00000557302 MNS1Q8NEH6 495 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 HM13Q8TCT9 377 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 FCRL3Q96P31 734 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-228ENST00000557302 CCM2Q9BSQ5 444 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 NAT9Q9BTE0 207 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 DPH5Q9H2P9 285 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 SYNDIG1Q9H7V2 258 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 KLK13Q9UKR3 277 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 UTP11Q9Y3A2 253 aaKnown RBP13.34□□□□□ -0.27
SHMT2-228ENST00000557302 NEUROG3Q9Y4Z2 214 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 PRSS21Q9Y6M0 314 aa13.34□□□□□ -0.27
SHMT2-228ENST00000557302 ZCWPW2A0A1B0GU75 182 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 C17orf113A0A1B0GUU1 675 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 GOLGA8KD6RF30 607 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 GOLGA8TH3BQL2 631 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 PFDN6O15212 129 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 PPM1DO15297 605 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 NDUFS3O75489 264 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 BANF1O75531 89 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 MT-CO3P00414 261 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 RPLP0P05388 317 aaKnown RBP13.33□□□□□ -0.28
SHMT2-228ENST00000557302 GSTM1P09488 218 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 OR56A5P0C7T3 313 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 JUPP14923 745 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 XRCC1P18887 633 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-228ENST00000557302 GPR3P46089 330 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 GSTM4Q03013 218 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 HHEXQ03014 270 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 THOC5Q13769 683 aaKnown RBP13.33□□□□□ -0.28
SHMT2-228ENST00000557302 SPIDRQ14159 915 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 NR1D2Q14995 579 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 HIF1AQ16665 826 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 MSS51Q4VC12 460 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-228ENST00000557302 METRNLQ641Q3 311 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 DUPD1Q68J44 220 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 NEPROQ6NW34 567 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 C8orf74Q6P047 294 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 LDB1Q86U70 411 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-228ENST00000557302 TRIM48Q8IWZ4 208 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms