RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 ACP1P24666 158 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 RPL10P27635 214 aaKnown RBP17.19■□□□□ 0.34
SHMT2-225ENST00000556798 PMLP29590 882 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 TTPAP49638 278 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 DRG2P55039 364 aaKnown RBP17.19■□□□□ 0.34
SHMT2-225ENST00000556798 NFE2L1Q14494 772 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 LONRF1Q17RB8 773 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 C14orf28Q4W4Y0 310 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 ZNF470Q6ECI4 717 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 NEPROQ6NW34 567 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 UNC5AQ6ZN44 842 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 EFL1Q7Z2Z2 1120 aaKnown RBP17.19■□□□□ 0.34
SHMT2-225ENST00000556798 FBXO36Q8NEA4 188 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 IFI44Q8TCB0 444 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 TTC1Q99614 292 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 PLAC1Q9HBJ0 212 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 EPB41L5Q9HCM4 733 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 NCKIPSDQ9NZQ3 722 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 PADI4Q9UM07 663 aa17.19■□□□□ 0.34
SHMT2-225ENST00000556798 COL27A1Q8IZC6 1860 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-225ENST00000556798 A6NCN8 305 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 PRR19A6NJB7 356 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 PDZK1P1A8MUH7 402 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 RFPL3O75679 317 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 F3P13726 295 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 VCLP18206 1134 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 RPIAP49247 311 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 DUSP3P51452 185 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-225ENST00000556798 CLCNKAP51800 687 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 THOC5Q13769 683 aaKnown RBP17.18■□□□□ 0.34
SHMT2-225ENST00000556798 HLTFQ14527 1009 aaKnown RBP eCLIP17.18■□□□□ 0.34
SHMT2-225ENST00000556798 SPANXN3Q5MJ09 141 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 PERM1Q5SV97 790 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 N4BP2L1Q5TBK1 243 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-225ENST00000556798 MRNIPQ6NTE8 343 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 CENPUQ71F23 418 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 KCNMB4Q86W47 210 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 DENND6AQ8IWF6 608 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 ZBED8Q8IZ13 594 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 ARL14Q8N4G2 192 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 LILRA3Q8N6C8 439 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-225ENST00000556798 SEC14L1Q92503 715 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 LRRC39Q96DD0 335 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 NAT9Q9BTE0 207 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 L2HGDHQ9H9P8 463 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 SAYSD1Q9NPB0 183 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 EVA1BQ9NVM1 165 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 SCHIP1Q9P0W5 487 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-225ENST00000556798 DNMT3AQ9Y6K1 912 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-225ENST00000556798 FAM169AQ9Y6X4 670 aa17.18■□□□□ 0.34
SHMT2-225ENST00000556798 UNC13CQ8NB66 2214 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 UBA6A0AVT1 1052 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-225ENST00000556798 EME2A4GXA9 379 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-225ENST00000556798 MGAT4DA6NG13 374 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 BHMG1C9JSJ3 638 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-225ENST00000556798 CASC3O15234 703 aaKnown RBP17.17■□□□□ 0.34
SHMT2-225ENST00000556798 NDUFS3O75489 264 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 AP2A2O94973 939 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 TTC4O95801 387 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 ERVK-10P10266 1014 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 ITGB6P18564 788 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 OGNP20774 298 aaKnown RBP17.17■□□□□ 0.34
SHMT2-225ENST00000556798 IDSP22304 550 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 PPARGP37231 505 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-225ENST00000556798 EIF3BP55884 814 aaKnown RBP17.17■□□□□ 0.34
SHMT2-225ENST00000556798 CAV1Q03135 178 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 DMPKQ09013 629 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 CTBP1Q13363 440 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 TYSND1Q2T9J0 566 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 HSP90AA5PQ58FG0 334 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 XKR5Q6UX68 686 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 CAPN12Q6ZSI9 719 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 SDCCAG8Q86SQ7 713 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-225ENST00000556798 CCDC25Q86WR0 208 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 CILP2Q8IUL8 1156 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 GPR150Q8NGU9 434 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 OR2L2Q8NH16 312 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 LKAAEAR1Q8TD35 194 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 SLC37A2Q8TED4 501 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 CCDC74AQ96AQ1 378 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 LINC00615Q96LM1 132 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-225ENST00000556798 CCM2Q9BSQ5 444 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 IARS2Q9NSE4 1012 aaKnown RBP17.17■□□□□ 0.34
SHMT2-225ENST00000556798 RABGEF1Q9UJ41 708 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 PSMD13Q9UNM6 376 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 APOBEC2Q9Y235 224 aaKnown RBP17.17■□□□□ 0.34
SHMT2-225ENST00000556798 WDR37Q9Y2I8 494 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 RNF215Q9Y6U7 377 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 CACNA1AO00555 2505 aa17.17■□□□□ 0.34
SHMT2-225ENST00000556798 IQCF5A8MTL0 148 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 PRMT5O14744 637 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-225ENST00000556798 OR56A5P0C7T3 313 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 BRAFP15056 766 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 SLC1A2P43004 574 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 CLDN6P56747 220 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 MPP1Q00013 466 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 GLE1Q53GS7 698 aaKnown RBP17.16■□□□□ 0.34
SHMT2-225ENST00000556798 ZNF789Q5FWF6 425 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 STEAP4Q687X5 459 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 TRMT10BQ6PF06 316 aaKnown RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms