RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 ITPAQ9BY32 194 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 ZHX3Q9H4I2 956 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 ZNF696Q9H7X3 374 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 APOBEC3GQ9HC16 384 aaKnown RBP3.09□□□□□ -1.91
VRK1-202ENST00000553683 SETD4Q9NVD3 440 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 ADPRHL2Q9NX46 363 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 OGFRQ9NZT2 677 aa3.09□□□□□ -1.91
VRK1-202ENST00000553683 CORO1CQ9ULV4 474 aaPredicted RBP3.09□□□□□ -1.91
VRK1-202ENST00000553683 A0A0G2JLW4 131 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 OR2M5A3KFT3 312 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 NDUFS4O43181 175 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 GAS8-AS1O95177 125 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 BMP10O95393 424 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 IGHV4-38-2P0DP08 117 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 ERVK-10P10266 1014 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 PON1P27169 355 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 PSMB10P40306 273 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 HSD17B4P51659 736 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 KRT32Q14532 448 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 KRTAP27-1Q3LI81 207 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 ZC2HC1CQ53FD0 456 aaPredicted RBP3.08□□□□□ -1.92
VRK1-202ENST00000553683 HAUS3Q68CZ6 603 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 ARHGAP17Q68EM7 881 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 RSRC2Q7L4I2 434 aaKnown RBP3.08□□□□□ -1.92
VRK1-202ENST00000553683 CEP97Q8IW35 865 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 RPAP2Q8IXW5 612 aaPredicted RBP3.08□□□□□ -1.92
VRK1-202ENST00000553683 STPG4Q8N801 248 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 RBM15BQ8NDT2 890 aaKnown RBP3.08□□□□□ -1.92
VRK1-202ENST00000553683 GSDMBQ8TAX9 411 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 SLX1AQ9BQ83 275 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 RAD21L1Q9H4I0 556 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.08□□□□□ -1.92
VRK1-202ENST00000553683 DNAJB4Q9UDY4 337 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 AMACRQ9UHK6 382 aa3.08□□□□□ -1.92
VRK1-202ENST00000553683 LAS1LQ9Y4W2 734 aaKnown RBP3.08□□□□□ -1.92
VRK1-202ENST00000553683 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.08□□□□□ -1.92
VRK1-202ENST00000553683 PRR32B1ATL7 298 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 J3QR06 171 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 ZBTB43O43298 467 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 GPR137BO60478 399 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 RARGP13631 454 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 GABRB1P18505 474 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 RXRGP48443 463 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 MMP15P51511 669 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 CDH8P55286 799 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 ARF3P61204 181 aaPredicted RBP3.07□□□□□ -1.92
VRK1-202ENST00000553683 ARF1P84077 181 aaKnown RBP3.07□□□□□ -1.92
VRK1-202ENST00000553683 IKQ13123 557 aaPredicted RBP3.07□□□□□ -1.92
VRK1-202ENST00000553683 MFAP5Q13361 173 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 MEP1AQ16819 746 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 ZNF876PQ49A33 203 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 LINGO4Q6UY18 593 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 RAD9BQ6WBX8 426 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 CHST9Q7L1S5 443 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 TRPT1Q86TN4 253 aaKnown RBP3.07□□□□□ -1.92
VRK1-202ENST00000553683 PTOV1Q86YD1 416 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 APLFQ8IW19 511 aaPredicted RBP3.07□□□□□ -1.92
VRK1-202ENST00000553683 C1orf131Q8NDD1 294 aaKnown RBP3.07□□□□□ -1.92
VRK1-202ENST00000553683 ZNF473Q8WTR7 871 aaKnown RBP3.07□□□□□ -1.92
VRK1-202ENST00000553683 ZKSCAN4Q969J2 545 aaPredicted RBP3.07□□□□□ -1.92
VRK1-202ENST00000553683 LRRC59Q96AG4 307 aaKnown RBP3.07□□□□□ -1.92
VRK1-202ENST00000553683 ELMOD3Q96FG2 381 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 ZNF354BQ96LW1 612 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 LITAFQ99732 161 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 PLK3Q9H4B4 646 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 DENND2DQ9H6A0 471 aaPredicted RBP3.07□□□□□ -1.92
VRK1-202ENST00000553683 KRT84Q9NSB2 600 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 FBXL17Q9UF56 701 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 TSPYL4Q9UJ04 414 aa3.07□□□□□ -1.92
VRK1-202ENST00000553683 ASTN2O75129 1339 aaPredicted RBP3.07□□□□□ -1.92
VRK1-202ENST00000553683 SLCO1B7G3V0H7 640 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 PLPP2O43688 288 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 KCNK5O95279 499 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 LIPFP07098 398 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 H1F0P07305 194 aaKnown RBP3.06□□□□□ -1.92
VRK1-202ENST00000553683 PLA2G4BP0C869 781 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 PRSS56P0CW18 603 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 LIFP15018 202 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 MSH3P20585 1137 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 ATP12AP54707 1039 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 ERVK11-1P61568 191 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 MRPS5P82675 430 aaKnown RBP3.06□□□□□ -1.92
VRK1-202ENST00000553683 MBTD1Q05BQ5 628 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 FCN2Q15485 313 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 PLEKHS1Q5SXH7 462 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 NDUFAF5Q5TEU4 345 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 FASTKD5Q7L8L6 764 aaKnown RBP3.06□□□□□ -1.92
VRK1-202ENST00000553683 GALNT13Q8IUC8 556 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 L3MBTL4Q8NA19 623 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 PPFIBP2Q8ND30 876 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 ZNF541Q9H0D2 1346 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 TRPC7Q9HCX4 862 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 EIF2B3Q9NR50 452 aaKnown RBP3.06□□□□□ -1.92
VRK1-202ENST00000553683 SLC38A7Q9NVC3 462 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 COQ3Q9NZJ6 369 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 C2CD2Q9Y426 696 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 JRKLQ9Y4A0 524 aa3.06□□□□□ -1.92
VRK1-202ENST00000553683 SNED1Q8TER0 1413 aa3.05□□□□□ -1.92
VRK1-202ENST00000553683 TEX13DA0A0J9YY54 714 aaPredicted RBP3.05□□□□□ -1.92
VRK1-202ENST00000553683 TMEM189-UBE2V1I3L0A0 370 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms