RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 PCDH19Q8TAB3 1148 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 METTL6Q8TCB7 284 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 DQX1Q8TE96 717 aaKnown RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 OSCP1Q8WVF1 389 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 VPS33AQ96AX1 596 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 FAM120BQ96EK7 910 aaKnown RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 HERC2P3Q9BVR0 1158 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 NKX2-4Q9H2Z4 354 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 ZFP14Q9HCL3 533 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 NSMCE4AQ9NXX6 385 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 EHD3Q9NZN3 535 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 IPPQ9Y573 584 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 A8MV72 311 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 TRAFD1O14545 582 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 FFAR3O14843 346 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 GPR42O15529 346 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 RSL1D1O76021 490 aaKnown RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 FADS2O95864 444 aaKnown RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 CD4P01730 458 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 C4BPAP04003 597 aaKnown RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 ABCB1P08183 1280 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 RBP1P09455 135 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 CDH2P19022 906 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 GRIK1P39086 918 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 ASPAP45381 313 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 MAP2K3P46734 347 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 MLC1Q15049 377 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 SPANXN3Q5MJ09 141 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 SLC35F1Q5T1Q4 408 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 TMEM53Q6P2H8 277 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 SNX29P2Q8IUI4 249 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 PLD6Q8N2A8 252 aaKnown RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 STX19Q8N4C7 294 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 CDYL2Q8N8U2 506 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 PNPLA1Q8N8W4 532 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 SPATA22Q8NHS9 363 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 MCFD2Q8NI22 146 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 TMEM174Q8WUU8 243 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 FAR1Q8WVX9 515 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 EDARADDQ8WWZ3 215 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 TBRG4Q969Z0 631 aaKnown RBP eCLIP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 MCRS1Q96EZ8 462 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 MAGEB10Q96LZ2 347 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 TBCBQ99426 244 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 FBRSL1Q9HCM7 1045 aaKnown RBP5.43□□□□□ -1.54
LIMA1-203ENST00000547825 RGS18Q9NS28 235 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 SACM1LQ9NTJ5 587 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 TBC1D13Q9NVG8 400 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 EVPLQ92817 2033 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 SDK1Q7Z5N4 2213 aa5.43□□□□□ -1.54
LIMA1-203ENST00000547825 CENPXA8MT69 81 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 VSTM5A8MXK1 200 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 EVPLLA8MZ36 301 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 CLDN25C9JDP6 229 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 CST1P01037 141 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 FCGR1AP12314 374 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 EN2P19622 333 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-203ENST00000547825 YWHAQP27348 245 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 IL12AP29459 219 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 TTKP33981 857 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 GJA9P57773 515 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 ODF1Q14990 250 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 TAB1Q15750 504 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 CYP2A13Q16696 494 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 ANKRD39Q53RE8 183 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 PPP4R4Q6NUP7 873 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 OTOP3Q7RTS5 596 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 HIPK1Q86Z02 1210 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 PSTKQ8IV42 348 aaKnown RBP5.42□□□□□ -1.54
LIMA1-203ENST00000547825 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.42□□□□□ -1.54
LIMA1-203ENST00000547825 AHI1Q8N157 1196 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 CACTIN-AS1Q8N1I8 211 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 FSTL5Q8N475 847 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-203ENST00000547825 SPPL2AQ8TCT8 520 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 ACMSDQ8TDX5 336 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 APBB2Q92870 758 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 PPP1R14BQ96C90 147 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 RCC1LQ96I51 464 aaKnown RBP5.42□□□□□ -1.54
LIMA1-203ENST00000547825 FAR2Q96K12 515 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.42□□□□□ -1.54
LIMA1-203ENST00000547825 MS4A5Q9H3V2 200 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 IFT22Q9H7X7 185 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 RIC8BQ9NVN3 520 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 GIN1Q9NXP7 522 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 FBXO5Q9UKT4 447 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 FAM32AQ9Y421 112 aaKnown RBP5.42□□□□□ -1.54
LIMA1-203ENST00000547825 MTF2Q9Y483 593 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-203ENST00000547825 TCRBV5S1A1TA0A578 114 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 CLDN5O00501 218 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 TRIM24O15164 1050 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 CLASP2O75122 1294 aaKnown RBP5.42□□□□□ -1.54
LIMA1-203ENST00000547825 H2AFYO75367 372 aaKnown RBP5.42□□□□□ -1.54
LIMA1-203ENST00000547825 CABYRO75952 493 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 ANXA9O76027 345 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 SEMA3DO95025 777 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 VNN1O95497 513 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 IFI30P13284 250 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 AOC1P19801 751 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 ATP5F1P24539 256 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-203ENST00000547825 ARRB2P32121 409 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms