RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 ZNF398Q8TD17 642 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 CXorf40BQ96DE9 158 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 SLC45A3Q96JT2 553 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 PANX2Q96RD6 677 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 OSBPL8Q9BZF1 889 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 RBSNQ9H1K0 784 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 ZNF768Q9H5H4 540 aaKnown RBP13.09□□□□□ -0.31
CPSF6-204ENST00000547486 GPN2Q9H9Y4 310 aaPredicted RBP13.09□□□□□ -0.31
CPSF6-204ENST00000547486 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.09□□□□□ -0.31
CPSF6-204ENST00000547486 PSMD13Q9UNM6 376 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 PKP3Q9Y446 797 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 STX7O15400 261 aaKnown RBP13.08□□□□□ -0.32
CPSF6-204ENST00000547486 TOX3O15405 576 aaPredicted RBP13.08□□□□□ -0.32
CPSF6-204ENST00000547486 KCNJ13O60928 360 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 PYGMP11217 842 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 VCLP18206 1134 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 FECHP22830 423 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 F8A1P23610 371 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 TNNT3P45378 269 aaPredicted RBP13.08□□□□□ -0.32
CPSF6-204ENST00000547486 CAPZBP47756 277 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 ZNF75DP51815 510 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 GEMP55040 296 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 ABHD18Q0P651 414 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 NFE2L1Q14494 772 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 ANKRD20A2Q5SQ80 823 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 LDLRAP1Q5SW96 308 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 ANKRD20A1Q5TYW2 823 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 ANKRD20A3Q5VUR7 823 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 METRNLQ641Q3 311 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 DENND5AQ6IQ26 1287 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 BORAQ6PGQ7 559 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 FAM92BQ6ZTR7 304 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 MICALCLQ6ZW33 695 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 DET1Q7L5Y6 550 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 PRICKLE2Q7Z3G6 844 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 OR4K2Q8NGD2 314 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 GPR150Q8NGU9 434 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 KLHL6Q8WZ60 621 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 ALG3Q92685 438 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 OR6C1Q96RD1 312 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 FSD1LQ9BXM9 530 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 GEMIN8Q9NWZ8 242 aaKnown RBP13.08□□□□□ -0.32
CPSF6-204ENST00000547486 EFR3BQ9Y2G0 817 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 DNMT3AQ9Y6K1 912 aaPredicted RBP13.08□□□□□ -0.32
CPSF6-204ENST00000547486 TENM4Q6N022 2769 aa13.08□□□□□ -0.32
CPSF6-204ENST00000547486 KCNN4O15554 427 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 PJA2O43164 708 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 SGTAO43765 313 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 PPFIA2O75334 1257 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 RASSF9O75901 435 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 ANXA9O76027 345 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 PRAMEF1O95521 474 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 PRKAR1AP10644 381 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 RBP3P10745 1247 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 SFTPCP11686 197 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 LPOP22079 712 aaPredicted RBP13.07□□□□□ -0.32
CPSF6-204ENST00000547486 CTNNA2P26232 953 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 PSMB4P28070 264 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 PBLDP30039 288 aaPredicted RBP13.07□□□□□ -0.32
CPSF6-204ENST00000547486 PTPN7P35236 360 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 NAP1L1P55209 391 aaKnown RBP13.07□□□□□ -0.32
CPSF6-204ENST00000547486 EIF3EP60228 445 aaKnown RBP13.07□□□□□ -0.32
CPSF6-204ENST00000547486 XIAPP98170 497 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 ITGA9Q13797 1035 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 SPARCL1Q14515 664 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 TAF1AQ15573 450 aaPredicted RBP13.07□□□□□ -0.32
CPSF6-204ENST00000547486 FNBP1LQ5T0N5 605 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 CCDC181Q5TID7 509 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 CACHD1Q5VU97 1274 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 PRSS42Q7Z5A4 293 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 TMTC1Q8IUR5 882 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 RBM12BQ8IXT5 1001 aaKnown RBP13.07□□□□□ -0.32
CPSF6-204ENST00000547486 LRRC57Q8N9N7 239 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 ACRBPQ8NEB7 543 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 CCDC110Q8TBZ0 833 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 ELMO2Q96JJ3 720 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 INSM2Q96T92 566 aaPredicted RBP13.07□□□□□ -0.32
CPSF6-204ENST00000547486 ULBP3Q9BZM4 244 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 FAM117AQ9C073 453 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 ZCCHC2Q9C0B9 1178 aaKnown RBP13.07□□□□□ -0.32
CPSF6-204ENST00000547486 RAB33BQ9H082 229 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 SMOXQ9NWM0 555 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 EPHA6Q9UF33 1036 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 FKBPLQ9UIM3 349 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 CFAP20Q9Y6A4 193 aaKnown RBP13.07□□□□□ -0.32
CPSF6-204ENST00000547486 BSNQ9UPA5 3926 aa13.07□□□□□ -0.32
CPSF6-204ENST00000547486 IGHV5-51A0A0C4DH38 117 aa13.06□□□□□ -0.32
CPSF6-204ENST00000547486 MACROD2A1Z1Q3 448 aa13.06□□□□□ -0.32
CPSF6-204ENST00000547486 GRID2IPA4D2P6 1211 aa13.06□□□□□ -0.32
CPSF6-204ENST00000547486 C5orf60A6NFR6 353 aa13.06□□□□□ -0.32
CPSF6-204ENST00000547486 ZNF891A8MT65 544 aaPredicted RBP13.06□□□□□ -0.32
CPSF6-204ENST00000547486 BTNL10A8MVZ5 291 aa13.06□□□□□ -0.32
CPSF6-204ENST00000547486 SUV39H1O43463 412 aa13.06□□□□□ -0.32
CPSF6-204ENST00000547486 SRP72O76094 671 aaKnown RBP13.06□□□□□ -0.32
CPSF6-204ENST00000547486 MSH3P20585 1137 aa13.06□□□□□ -0.32
CPSF6-204ENST00000547486 OAS2P29728 719 aaKnown RBP13.06□□□□□ -0.32
CPSF6-204ENST00000547486 STAT5AP42229 794 aa13.06□□□□□ -0.32
CPSF6-204ENST00000547486 HALP42357 657 aa13.06□□□□□ -0.32
CPSF6-204ENST00000547486 POLE2P56282 527 aa13.06□□□□□ -0.32
CPSF6-204ENST00000547486 RWDD2BP57060 319 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms