RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 RCOR3Q9P2K3 495 aaPredicted RBP8.81□□□□□ -1
VPS13D-212ENST00000543766 ZNF221Q9UK13 617 aa8.81□□□□□ -1
VPS13D-212ENST00000543766 EIF3LQ9Y262 564 aaKnown RBP8.81□□□□□ -1
VPS13D-212ENST00000543766 PLEKHA6Q9Y2H5 1048 aa8.81□□□□□ -1
VPS13D-212ENST00000543766 PCDHGC4Q9Y5F7 938 aa8.81□□□□□ -1
VPS13D-212ENST00000543766 PCDHGA6Q9Y5G7 932 aa8.81□□□□□ -1
VPS13D-212ENST00000543766 MICAL3Q7RTP6 2002 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 A0A1B0GUL6 1792 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 H7C2Y5 167 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 RGS13O14921 159 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 BET1O15155 118 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 PSMD3O43242 534 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 CST8O60676 142 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 MGAT1P26572 445 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 SPAM1P38567 509 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 SOX9P48436 509 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 CDK16Q00536 496 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 PTPN12Q05209 780 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 INPP5AQ14642 412 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 NAB2Q15742 525 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 PLA1AQ53H76 456 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 ZNF311Q5JNZ3 666 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 TTC38Q5R3I4 469 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 HP1BP3Q5SSJ5 553 aaPredicted RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 TYW3Q6IPR3 259 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 ULK3Q6PHR2 472 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 PLEKHH3Q7Z736 793 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 ERI1Q8IV48 349 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 ZC3H7AQ8IWR0 971 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 GTF2H4Q92759 462 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 TNFRSF14Q92956 283 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 SHISA4Q96DD7 197 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 CRAMP1Q96RY5 1269 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 SF3B5Q9BWJ5 86 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 ST6GALNAC4Q9H4F1 302 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 BTG4Q9NY30 223 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 KLHL14Q9P2G3 628 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 SCML1Q9UN30 329 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 RUVBL2Q9Y230 463 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 BTBD18B2RXH4 712 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 FAM86B1E9PN63 330 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 KHDRBS3O75525 346 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 FAM86B2P0C5J1 330 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 TYRP1P17643 537 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 CBLP22681 906 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 LUMP51884 338 aaPredicted RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 ESRRGP62508 458 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 VAMP2P63027 116 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 FOXM1Q08050 763 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 SPA17Q15506 151 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 HLFQ16534 295 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 FSCN1Q16658 493 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 FAM98CQ17RN3 349 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 PRR5LQ6MZQ0 368 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 NANOGP8Q6NSW7 305 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 PXKQ7Z7A4 578 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 CDAN1Q8IWY9 1227 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 FAM86B1Q8N7N1 296 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 WDSUB1Q8N9V3 476 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 OR8J1Q8NGP2 316 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 BRI3BPQ8WY22 251 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 ZCCHC14Q8WYQ9 949 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 GTPBP3Q969Y2 492 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 FAM84AQ96KN4 292 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 THUMPD3Q9BV44 507 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 GTPBP2Q9BX10 602 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 SLC6A16Q9GZN6 736 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 ELP3Q9H9T3 547 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 RAVER2Q9HCJ3 691 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 ASCL3Q9NQ33 180 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.8□□□□□ -1
VPS13D-212ENST00000543766 ACTR10Q9NZ32 417 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 ANKMY1Q9P2S6 941 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 TJP2Q9UDY2 1190 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 MGAT4BQ9UQ53 548 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 AKAP11Q9UKA4 1901 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 CHD5Q8TDI0 1954 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 SSU72P8A0A1W2PR75 194 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 ZNF862O60290 1169 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 LCMT2O60294 686 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 ZDHHC11BP0C7U3 371 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 HOXB3P14651 431 aaPredicted RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 CHRNA3P32297 505 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 ATP5C1P36542 298 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 GPR15P49685 360 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 PER3P56645 1201 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 SIGLEC14Q08ET2 396 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 MRPL49Q13405 166 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 DDX39BQ13838 428 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 CTTNQ14247 550 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 ZNF385CQ66K41 422 aaPredicted RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 DHFR2Q86XF0 187 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 TGIF2LXQ8IUE1 241 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 FAM185AQ8N0U4 392 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 ZFP82Q8N141 532 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 ZCCHC7Q8N3Z6 543 aaKnown RBP8.8□□□□□ -1
VPS13D-212ENST00000543766 OR5T1Q8NG75 326 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 TPCN2Q8NHX9 752 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 CHPT1Q8WUD6 406 aa8.8□□□□□ -1
VPS13D-212ENST00000543766 ZNF764Q96H86 408 aaPredicted RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms