RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 NIPSNAP2O75323 286 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 SOAT2O75908 522 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 BMP10O95393 424 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 URODP06132 367 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 ZNF182P17025 639 aaPredicted RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 CYP2C18P33260 490 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 CD68P34810 354 aaPredicted RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 GARSP41250 739 aaKnown RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 CCL23P55773 120 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 CYP4F2P78329 520 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 CYP4F3Q08477 520 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 IFRD2Q12894 506 aaPredicted RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 CARTPTQ16568 116 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 MGAT5BQ3V5L5 792 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 TRIM60Q495X7 471 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 ZBED5Q49AG3 693 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 PPM1LQ5SGD2 360 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 TTC33Q6PID6 262 aaPredicted RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 OTOP3Q7RTS5 596 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 SCN4BQ8IWT1 228 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 ARHGAP12Q8IWW6 846 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 CHERPQ8IWX8 916 aaKnown RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 ZNF683Q8IZ20 524 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 PPWD1Q96BP3 646 aaKnown RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 LRRC39Q96DD0 335 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 TOX2Q96NM4 488 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 LENG8Q96PV6 779 aaPredicted RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 CINPQ9BW66 212 aaPredicted RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 FAM126AQ9BYI3 521 aaPredicted RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 CEP41Q9BYV8 373 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 RNF208Q9H0X6 261 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 SP110Q9HB58 689 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 VPS45Q9NRW7 570 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 OLAHQ9NV23 265 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 BAG5Q9UL15 447 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 TBX21Q9UL17 535 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 SNX13Q9Y5W8 968 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 ST14Q9Y5Y6 855 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 NT5C1B-RDH14C9J2C7 533 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 H3BMQ9 156 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 PSMD11O00231 422 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 NEMP1O14524 444 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 CLOCKO15516 846 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 NOL3O60936 208 aaKnown RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 SNNO75324 88 aaPredicted RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 PAGE1O75459 146 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 PRKCHP24723 683 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 PSMB4P28070 264 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 NRG1Q02297 640 aaPredicted RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 C19orf57Q0VDD7 668 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 GPR17Q13304 367 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 SETMARQ53H47 684 aaPredicted RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 AFMIDQ63HM1 303 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 ZFP1Q6P2D0 407 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 RNF19BQ6ZMZ0 732 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.92□□□□□ -1.143e-8■■■□□ 14.8
PDLIM5-221ENST00000542407 BNC2Q6ZN30 1099 aaPredicted RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 UNC5AQ6ZN44 842 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 MON1AQ86VX9 555 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 KLHDC8BQ8IXV7 354 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 Q8N9G6 341 aaPredicted RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 PDCD6IPQ8WUM4 868 aaKnown RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 KCTD4Q8WVF5 259 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 CAPSLQ8WWF8 208 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 ZNF419Q96HQ0 510 aaPredicted RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 FCRL2Q96LA5 508 aaPredicted RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 ACAT2Q9BWD1 397 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 SLC2A11Q9BYW1 496 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 LMAN2LQ9H0V9 348 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 CWH43Q9H720 699 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 RPF2Q9H7B2 306 aaKnown RBP7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 PNPLA3Q9NST1 481 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 REV1Q9UBZ9 1251 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 ZNF69Q9UC07 566 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 BCAP29Q9UHQ4 241 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 NUDT5Q9UKK9 219 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 LRFN2Q9ULH4 789 aa7.92□□□□□ -1.14
PDLIM5-221ENST00000542407 NYNRINQ9P2P1 1898 aaKnown RBP7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 PRR23AA6NEV1 266 aa7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 NDUFS6O75380 124 aaKnown RBP7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 SPAG6O75602 509 aa7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 MLNP12872 115 aa7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 MAP4P27816 1152 aaKnown RBP7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 SOX6P35712 828 aa7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 GDI2P50395 445 aaKnown RBP7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 IFITM2Q01629 132 aa7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 NEDD8Q15843 81 aa7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 LSM12Q3MHD2 195 aaKnown RBP7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 STEAP4Q687X5 459 aa7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 KCTD11Q693B1 232 aa7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 MAVSQ7Z434 540 aa7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 ADAMTSL2Q86TH1 951 aa7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 STX12Q86Y82 276 aa7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 SNX29P2Q8IUI4 249 aa7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 PM20D2Q8IYS1 436 aa7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 GPR152Q8TDT2 470 aa7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 DEPDC1BQ8WUY9 529 aa7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 TOE1Q96GM8 510 aaKnown RBP7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 KLHL32Q96NJ5 620 aa7.91□□□□□ -1.14
PDLIM5-221ENST00000542407 EBNA1BP2Q99848 306 aaKnown RBP7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms