RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 DDHD1Q8NEL9 900 aa11.76□□□□□ -0.53
CBX3P4-202ENST00000540428 SLC35G2Q8TBE7 412 aa11.76□□□□□ -0.53
CBX3P4-202ENST00000540428 CT55Q8WUE5 264 aa11.76□□□□□ -0.53
CBX3P4-202ENST00000540428 ZFPM2Q8WW38 1151 aa11.76□□□□□ -0.53
CBX3P4-202ENST00000540428 THAP4Q8WY91 577 aa11.76□□□□□ -0.53
CBX3P4-202ENST00000540428 ANP32EQ9BTT0 268 aa11.76□□□□□ -0.53
CBX3P4-202ENST00000540428 DEF6Q9H4E7 631 aa11.76□□□□□ -0.53
CBX3P4-202ENST00000540428 BPIFA1Q9NP55 256 aa11.76□□□□□ -0.53
CBX3P4-202ENST00000540428 IL26Q9NPH9 171 aa11.76□□□□□ -0.53
CBX3P4-202ENST00000540428 DDX56Q9NY93 547 aaKnown RBP11.76□□□□□ -0.53
CBX3P4-202ENST00000540428 IL17CQ9P0M4 197 aa11.76□□□□□ -0.53
CBX3P4-202ENST00000540428 IFNKQ9P0W0 207 aa11.76□□□□□ -0.53
CBX3P4-202ENST00000540428 TRIM10Q9UDY6 481 aa11.76□□□□□ -0.53
CBX3P4-202ENST00000540428 COL12A1Q99715 3063 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 IGHV5-51A0A0C4DH38 117 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 KLHL33A6NCF5 533 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 TLCD2A6NGC4 264 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 POP7O75817 140 aaKnown RBP11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 TIAF1O95411 115 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 KRT1P04264 644 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 TPM3P06753 285 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 FOLR1P15328 257 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 SLC1A1P43005 524 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 TNNT3P45378 269 aaPredicted RBP11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 ITGA9Q13797 1035 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 TRIM14Q14142 442 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 TFDP2Q14188 446 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 UGT8Q16880 541 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 ODF2Q5BJF6 829 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 PWWP2BQ6NUJ5 590 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 KDELC1Q6UW63 502 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 SYVN1Q86TM6 617 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 TMEM135Q86UB9 458 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 RFX6Q8HWS3 928 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 RHOT1Q8IXI2 618 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 TTC30BQ8N4P2 665 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 RASGEF1AQ8N9B8 481 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 OR8K1Q8NGG5 319 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 GPR150Q8NGU9 434 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 TFB1MQ8WVM0 346 aaKnown RBP11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 ZNF514Q96K75 400 aaPredicted RBP11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 PSMG3-AS1Q96PY0 264 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 VAT1Q99536 393 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 DNAJC7Q99615 494 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 ACTL8Q9H568 366 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 FGF21Q9NSA1 209 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 SMOXQ9NWM0 555 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 UBP1Q9NZI7 540 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 NBASA2RRP1 2371 aa11.75□□□□□ -0.53
CBX3P4-202ENST00000540428 RELNP78509 3460 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 GLYATL1P3A0A0U1RQE8 302 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 SYCE3A1L190 88 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 OR5K3A6NET4 321 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 AKR1B10O60218 316 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 CPNE3O75131 537 aaKnown RBP11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 HLA-DPA1P20036 260 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 PTPN4P29074 926 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 CD68P34810 354 aaPredicted RBP11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 ARL4DP49703 201 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 CTSCP53634 463 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 MLLT10P55197 1068 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 WNT3AP56704 352 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 PPP1CAP62136 330 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 RPS15P62841 145 aaKnown RBP11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 TUBB4BP68371 445 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 HSD11B2P80365 405 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 PDE1BQ01064 536 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 TUBB2AQ13885 445 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 PLCL1Q15111 1095 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 PPP2R5EQ16537 467 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 TAZQ16635 292 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 LONRF2Q1L5Z9 754 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 DNTTIP2Q5QJE6 756 aaKnown RBP11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 FAM182AQ5T1J6 154 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 METRNLQ641Q3 311 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 OOSP2Q86WS3 158 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 D2HGDHQ8N465 521 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 BEND7Q8N7W2 519 aaPredicted RBP11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 OR8K5Q8NH50 307 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 RNF25Q96BH1 459 aaPredicted RBP11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 RNF31Q96EP0 1072 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 FCRL5Q96RD9 977 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 MAP3K3Q99759 626 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 TUBB2BQ9BVA1 445 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 MLXIPLQ9NP71 852 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 ZNHIT6Q9NWK9 470 aaKnown RBP11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 PKP3Q9Y446 797 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 PCDHGA9Q9Y5G4 932 aaKnown RBP11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 LRRK2Q5S007 2527 aa11.74□□□□□ -0.53
CBX3P4-202ENST00000540428 FLNCQ14315 2725 aa11.73□□□□□ -0.53
CBX3P4-202ENST00000540428 UBA6A0AVT1 1052 aaPredicted RBP11.73□□□□□ -0.53
CBX3P4-202ENST00000540428 UGT1A9O60656 530 aa11.73□□□□□ -0.53
CBX3P4-202ENST00000540428 VPS4BO75351 444 aa11.73□□□□□ -0.53
CBX3P4-202ENST00000540428 ZBTB11O95625 1053 aaPredicted RBP11.73□□□□□ -0.53
CBX3P4-202ENST00000540428 EBLN1P0CF75 366 aa11.73□□□□□ -0.53
CBX3P4-202ENST00000540428 MTHFD1P11586 935 aaKnown RBP11.73□□□□□ -0.53
CBX3P4-202ENST00000540428 UGT1A6P19224 532 aa11.73□□□□□ -0.53
CBX3P4-202ENST00000540428 NFKB1P19838 968 aa11.73□□□□□ -0.53
CBX3P4-202ENST00000540428 UGT1A1P22309 533 aa11.73□□□□□ -0.53
CBX3P4-202ENST00000540428 UGT1A4P22310 534 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms