RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 SOAT2O75908 522 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 LDLRP01130 860 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 IQCF3P0C7M6 154 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 CLEC2LP0C7M8 214 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 TGM2P21980 687 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 ERP29P30040 261 aaKnown RBP9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 HOXC8P31273 242 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 CDH5P33151 784 aaPredicted RBP9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 TRAF3Q13114 568 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 PRKAA1Q13131 559 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 ZMYND11Q15326 602 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 LRRC26Q2I0M4 334 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 GARNL3Q5VVW2 1013 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 LAIR2Q6ISS4 152 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 LCN8Q6JVE9 175 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 GDF6Q6KF10 455 aaPredicted RBP9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 LETMD1Q6P1Q0 360 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 DNAJC24Q6P3W2 148 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 SLC39A4Q6P5W5 647 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 TXNDC11Q6PKC3 985 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 ZNF534Q76KX8 674 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 TBC1D21Q8IYX1 336 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 SLC7A14Q8TBB6 771 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 FBXW5Q969U6 566 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 ELMO2Q96JJ3 720 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 FAM84AQ96KN4 292 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 SPOCK3Q9BQ16 436 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 NUAK2Q9H093 628 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 CDHR5Q9HBB8 845 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 FANCFQ9NPI8 374 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 ENTPD7Q9NQZ7 604 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 MTMR10Q9NXD2 777 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 NUFIP1Q9UHK0 495 aaKnown RBP9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 GTF2IRD1Q9UHL9 959 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 TRMT6Q9UJA5 497 aaKnown RBP9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 HES2Q9Y543 173 aa9.38□□□□□ -0.91
CTNNA1-243ENST00000540387 ARID2Q68CP9 1835 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 EVPLQ92817 2033 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 SMIM35A0A1B0GVV1 85 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 OR6C70A6NIJ9 312 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 SLCO1B7G3V0H7 640 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 H0YCG3 227 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 HNRNPDLO14979 420 aaKnown RBP9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 IFNA16P05015 189 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 SNRPB2P08579 225 aaKnown RBP9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 THRBP10828 461 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 ITGA2P17301 1181 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 MAGEA3P43357 314 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 TPD52P55327 224 aaPredicted RBP9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 CD83Q01151 205 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 SLC25A11Q02978 314 aaKnown RBP9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 UBE3AQ05086 875 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 ACOX1Q15067 660 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 SNRNP35Q16560 246 aaKnown RBP9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 CYP51A1Q16850 503 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 PLEKHG6Q3KR16 790 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 ATF7IP2Q5U623 682 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 KIAA1324Q6UXG2 1013 aaKnown RBP9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 SV2AQ7L0J3 742 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 EFL1Q7Z2Z2 1120 aaKnown RBP9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 CTU1Q7Z7A3 348 aaKnown RBP9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 PLCZ1Q86YW0 608 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 PELI3Q8N2H9 469 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 MSANTD3Q96H12 275 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 ZBTB45Q96K62 511 aaPredicted RBP9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 RPL10LQ96L21 214 aaKnown RBP9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 TRAF4Q9BUZ4 470 aaPredicted RBP9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 DCSTAMPQ9H295 470 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 TMEM134Q9H6X4 195 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 PAK6Q9NQU5 681 aaPredicted RBP9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 PCDHGB3Q9Y5G1 929 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 COMMD10Q9Y6G5 202 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 A0A0B4J203 849 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 TMEM233B4DJY2 109 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 SLC1A7O00341 560 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 SDHDO14521 159 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 NRP2O60462 931 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 GPIP06744 558 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 KRT7P08729 469 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 CCL5P13501 91 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 ARSAP15289 507 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 MAP2K4P45985 399 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 ATP5OP48047 213 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 GRIA4P48058 902 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 NPY2RP49146 381 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 ARSFP54793 590 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 SNRPD2P62316 118 aaKnown RBP9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 PRKCDQ05655 676 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 CD47Q08722 323 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 DGCR6Q14129 220 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 GALEQ14376 348 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 PRPSAP1Q14558 356 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 DDR2Q16832 855 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 FIP1L1Q6UN15 594 aaKnown RBP9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 ZBTB8OSQ8IWT0 167 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 ANKRD52Q8NB46 1076 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 TMEM174Q8WUU8 243 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 MFSD3Q96ES6 412 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 TSNARE1Q96NA8 513 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms