RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 TLR6Q9Y2C9 796 aa6.64□□□□□ -1.35
USP28-207ENST00000538475 PCDHGB2Q9Y5G2 931 aa6.64□□□□□ -1.35
USP28-207ENST00000538475 PCDHA9Q9Y5H5 950 aa6.64□□□□□ -1.35
USP28-207ENST00000538475 N6AMT1Q9Y5N5 214 aa6.64□□□□□ -1.35
USP28-207ENST00000538475 SCN8AQ9UQD0 1980 aa6.64□□□□□ -1.35
USP28-207ENST00000538475 A0A0G2JMZ2 1700 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 CCDC154A6NI56 674 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 LRRC37A2A6NM11 1700 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 K7ERI5 159 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 DLX3O60479 287 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 B4GALT4O60513 344 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 PRKD3O94806 890 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 KCNH1O95259 989 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 SNAP29O95721 258 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 AP2A1O95782 977 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 CALCAP01258 141 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 TNNC2P02585 160 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 LTFP02788 710 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 HOXB8P17481 243 aaPredicted RBP6.63□□□□□ -1.35
USP28-207ENST00000538475 GPX3P22352 226 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 SLC6A2P23975 617 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 IL32P24001 234 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 CYP2F1P24903 491 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 MGAT1P26572 445 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 ERP29P30040 261 aaKnown RBP6.63□□□□□ -1.35
USP28-207ENST00000538475 SDC4P31431 198 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 ADMP35318 185 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 HTR3AP46098 478 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 AIF1P55008 147 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 GP2P55259 537 aaKnown RBP6.63□□□□□ -1.35
USP28-207ENST00000538475 SRP54P61011 504 aaKnown RBP6.63□□□□□ -1.35
USP28-207ENST00000538475 MRPS15P82914 257 aaKnown RBP6.63□□□□□ -1.35
USP28-207ENST00000538475 NFKB2Q00653 900 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 POU4F1Q01851 419 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 ZNF33AQ06730 810 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 IFRD2Q12894 506 aaPredicted RBP6.63□□□□□ -1.35
USP28-207ENST00000538475 BAMBIQ13145 260 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 SEMA3BQ13214 749 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 PICALMQ13492 652 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 DNASE1L3Q13609 305 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 MTMR1Q13613 665 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 STARD3Q14849 445 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 FSCN1Q16658 493 aaKnown RBP6.63□□□□□ -1.35
USP28-207ENST00000538475 CYP51A1Q16850 503 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 FBXO43Q4G163 708 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 FAM98BQ52LJ0 330 aaKnown RBP6.63□□□□□ -1.35
USP28-207ENST00000538475 YIF1BQ5BJH7 314 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 XKR3Q5GH77 459 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 TREML2Q5T2D2 321 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 FAM102AQ5T9C2 384 aaPredicted RBP6.63□□□□□ -1.35
USP28-207ENST00000538475 PIK3R6Q5UE93 754 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 TMEM198Q66K66 360 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 CDC42EP5Q6NZY7 148 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 KCNT2Q6UVM3 1135 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 PLD3Q8IV08 490 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 KLHDC8BQ8IXV7 354 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 CPNE9Q8IYJ1 553 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 ELMOD2Q8IZ81 293 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 DCP1BQ8IZD4 617 aaKnown RBP6.63□□□□□ -1.35
USP28-207ENST00000538475 MIER2Q8N344 545 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 FAM109AQ8N4B1 249 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 TAB3Q8N5C8 712 aaPredicted RBP6.63□□□□□ -1.35
USP28-207ENST00000538475 COLGALT1Q8NBJ5 622 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 FAM156AQ8NDB6 213 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 KBTBD8Q8NFY9 601 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 MCFD2Q8NI22 146 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 HMGCLL1Q8TB92 370 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 SLC22A17Q8WUG5 538 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 RXFP2Q8WXD0 754 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 TFAP2BQ92481 460 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 CENPIQ92674 756 aaPredicted RBP6.63□□□□□ -1.35
USP28-207ENST00000538475 LRRC58Q96CX6 371 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 PGBD4Q96DM1 585 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 CLIP3Q96DZ5 547 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 L3HYPDHQ96EM0 354 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 MFSD3Q96ES6 412 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 TSPAN17Q96FV3 270 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 SLC39A13Q96H72 371 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 SCYL1Q96KG9 808 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 CCDC115Q96NT0 180 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 PEBP4Q96S96 227 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 KIFC1Q9BW19 673 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 FAM118AQ9NWS6 357 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 SNTG2Q9NY99 539 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 HOXC10Q9NYD6 342 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 MRPL39Q9NYK5 338 aaKnown RBP6.63□□□□□ -1.35
USP28-207ENST00000538475 KLQ9UEF7 1012 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 TRHDEQ9UKU6 1024 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 RUVBL2Q9Y230 463 aaKnown RBP6.63□□□□□ -1.35
USP28-207ENST00000538475 TMX2Q9Y320 296 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 RBMX2Q9Y388 322 aaKnown RBP6.63□□□□□ -1.35
USP28-207ENST00000538475 ORC6Q9Y5N6 252 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 PSAT1Q9Y617 370 aa6.63□□□□□ -1.35
USP28-207ENST00000538475 PDCD11Q14690 1871 aaKnown RBP6.62□□□□□ -1.35
USP28-207ENST00000538475 ADAMTSL1Q8N6G6 1762 aa6.62□□□□□ -1.35
USP28-207ENST00000538475 ZNF541Q9H0D2 1346 aa6.62□□□□□ -1.35
USP28-207ENST00000538475 A0A075B6Q4 140 aa6.62□□□□□ -1.35
USP28-207ENST00000538475 ZCWPW2A0A1B0GU75 182 aa6.62□□□□□ -1.35
USP28-207ENST00000538475 A0A1W2PP18 115 aa6.62□□□□□ -1.35
USP28-207ENST00000538475 PRR23AA6NEV1 266 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms