RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 PGM5Q15124 567 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 ANO4Q32M45 955 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 TMTC4Q5T4D3 741 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 ARHGEF16Q5VV41 709 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 CASC4Q6P4E1 433 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 HACD2Q6Y1H2 254 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 ZCCHC23Q6ZST2 131 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 DHFR2Q86XF0 187 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 C10orf107Q8IVU9 208 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 ADGRF2Q8IZF7 708 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 LINC01356Q8N9X3 169 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 NUDT10Q8NFP7 164 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 BEST2Q8NFU1 509 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 GABPB2Q8TAK5 448 aaPredicted RBP6.56□□□□□ -1.36
USP28-202ENST00000535607 CYP2W1Q8TAV3 490 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 TBC1D15Q8TC07 691 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 ADAMTS17Q8TE56 1095 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 HSPH1Q92598 858 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 ZUFSPQ96AP4 578 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 DACT3Q96B18 629 aaPredicted RBP6.56□□□□□ -1.36
USP28-202ENST00000535607 NUDT11Q96G61 164 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 LENG8Q96PV6 779 aaPredicted RBP6.56□□□□□ -1.36
USP28-202ENST00000535607 PSD2Q9BQI7 771 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 SH2D3AQ9BRG2 576 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 PDCD2LQ9BRP1 358 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 PI4K2AQ9BTU6 479 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 HGH1Q9BTY7 390 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 IL22Q9GZX6 179 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 RMND5AQ9H871 391 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 COQ10BQ9H8M1 238 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 EML4Q9HC35 981 aaKnown RBP6.56□□□□□ -1.36
USP28-202ENST00000535607 ANKHQ9HCJ1 492 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 AGO4Q9HCK5 861 aaKnown RBP6.56□□□□□ -1.36
USP28-202ENST00000535607 SPAG4Q9NPE6 437 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 XPNPEP3Q9NQH7 507 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 INIPQ9NRY2 104 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 C20orf96Q9NUD7 363 aaPredicted RBP6.56□□□□□ -1.36
USP28-202ENST00000535607 PNPOQ9NVS9 261 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 ARMC1Q9NVT9 282 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 TRNAU1APQ9NX07 287 aaKnown RBP6.56□□□□□ -1.36
USP28-202ENST00000535607 MOCS1Q9NZB8 636 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 COL20A1Q9P218 1284 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 DAPK2Q9UIK4 370 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 TLK1Q9UKI8 766 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 SNX13Q9Y5W8 968 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 PLXNA1Q9UIW2 1896 aa6.56□□□□□ -1.36
USP28-202ENST00000535607 RNF103-CHMP3A0A140T963 221 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 TCRBV7S3A2A0A539 114 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 TCRBV5S1A1TA0A578 114 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 MAGEB16A2A368 324 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 C9orf118A6NHY6 69 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 ASB14A6NK59 587 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 AQP12BA6NM10 295 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 BBIP1A8MTZ0 92 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 CENPBD1B2RD01 187 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 TISP43B9A030 160 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 H3BMQ9 156 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 K7EPI3 171 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 M0QX08 132 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 DDX39AO00148 427 aaKnown RBP6.55□□□□□ -1.36
USP28-202ENST00000535607 ACOT8O14734 319 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 TPP1O14773 563 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 HTRA2O43464 458 aaPredicted RBP6.55□□□□□ -1.36
USP28-202ENST00000535607 MGEA5O60502 916 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 LRCH4O75427 683 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 LYPLA1O75608 230 aaPredicted RBP6.55□□□□□ -1.36
USP28-202ENST00000535607 CABYRO75952 493 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 CLPXO76031 633 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 VAPBO95292 243 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 TNNC2P02585 160 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 CSH1P0DML2 217 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 CSH2P0DML3 217 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 ARP10275 920 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 XRCC1P18887 633 aaPredicted RBP6.55□□□□□ -1.36
USP28-202ENST00000535607 GPD1P21695 349 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 FASP25445 335 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 ADORA2AP29274 412 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 SERPINB1P30740 379 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 MAGEA3P43357 314 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 GSSP48637 474 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 KRT6CP48668 564 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 CSE1LP55060 971 aaKnown RBP6.55□□□□□ -1.36
USP28-202ENST00000535607 PSME3P61289 254 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 CDKL1Q00532 357 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 EPS8Q12929 822 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 ITGADQ13349 1161 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 SQLEQ14534 574 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 ARHGEF6Q15052 776 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 EIF4HQ15056 248 aaKnown RBP6.55□□□□□ -1.36
USP28-202ENST00000535607 PDK1Q15118 436 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 STXBP2Q15833 593 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 PSMD5Q16401 504 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 NRF1Q16656 503 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 AASDHQ4L235 1098 aaPredicted RBP6.55□□□□□ -1.36
USP28-202ENST00000535607 PRR31Q5SQ13 230 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 TMEM240Q5SV17 173 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 CCNYL2Q5T2Q4 361 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 ZNF618Q5T7W0 954 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 GPR107Q5VW38 600 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 LIPMQ5VYY2 423 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms