RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TGFBIQ15582 683 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 FAM171A1Q5VUB5 890 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 ELMSAN1Q6PJG2 1045 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 SLC24A5Q71RS6 500 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 RALGPS2Q86X27 583 aaPredicted RBP19.02■□□□□ 0.64
VPS28-213ENST00000530983 RIMKLAQ8IXN7 391 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 SFRP1Q8N474 314 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 DPP10Q8N608 796 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 DOK1Q99704 481 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 PLGRKTQ9HBL7 147 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 PFDN4Q9NQP4 134 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 VPS9D1Q9Y2B5 631 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 FNDC3AQ9Y2H6 1198 aaKnown RBP19.02■□□□□ 0.64
VPS28-213ENST00000530983 ZNF711Q9Y462 761 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 ARIH1Q9Y4X5 557 aaPredicted RBP19.02■□□□□ 0.64
VPS28-213ENST00000530983 PCDHGC4Q9Y5F7 938 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 MTMR11A4FU01 709 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 H0Y858 1186 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 H3BMQ9 156 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 CD9P21926 228 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 HTR6P50406 440 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 RPS24P62847 133 aaKnown RBP19.02■□□□□ 0.64
VPS28-213ENST00000530983 SELPLGQ14242 412 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 PLCL1Q15111 1095 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 HABP4Q5JVS0 413 aaKnown RBP19.02■□□□□ 0.64
VPS28-213ENST00000530983 NUDT8Q8WV74 236 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 COG8Q96MW5 612 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 ACTL8Q9H568 366 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 POLR1BQ9H9Y6 1135 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 NTN4Q9HB63 628 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 BPIFA1Q9NP55 256 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 SCUBE2Q9NQ36 999 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 TLR9Q9NR96 1032 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 HEBP1Q9NRV9 189 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 TMEM45AQ9NWC5 275 aa19.02■□□□□ 0.64
VPS28-213ENST00000530983 DYTNA2CJ06 578 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 SEPT4O43236 478 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 KDELR3O43731 214 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 ACSL4O60488 711 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 DCKP27707 260 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 YAP1P46937 504 aaKnown RBP19.01■□□□□ 0.63
VPS28-213ENST00000530983 CD97P48960 835 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 OXCT1P55809 520 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 GLYATQ6IB77 296 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 RSPO2Q6UXX9 243 aaPredicted RBP19.01■□□□□ 0.63
VPS28-213ENST00000530983 CHST15Q7LFX5 561 aaPredicted RBP19.01■□□□□ 0.63
VPS28-213ENST00000530983 DTWD1Q8N5C7 304 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 ZNF420Q8TAQ5 688 aaPredicted RBP19.01■□□□□ 0.63
VPS28-213ENST00000530983 KCNJ9Q92806 393 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 HBEGFQ99075 208 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 BDH2Q9BUT1 245 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 GPR62Q9BZJ7 368 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.01■□□□□ 0.633e-6■■□□□ 14.1
VPS28-213ENST00000530983 PCDHB3Q9Y5E6 796 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 A0A0U1RQS6 177 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 GRXCR2A6NFK2 248 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 UPK1AO00322 258 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 MTPNP58546 118 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 C16orf72Q14CZ0 275 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 GPR107Q5VW38 600 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 RNF19BQ6ZMZ0 732 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 KCTD8Q6ZWB6 473 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 SPATA17Q96L03 361 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 NSMCE2Q96MF7 247 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 PPM1MQ96MI6 270 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 MAGEL2Q9UJ55 1249 aa19.01■□□□□ 0.63
VPS28-213ENST00000530983 AGO1Q9UL18 857 aaKnown RBP19.01■□□□□ 0.63
VPS28-213ENST00000530983 HTTP42858 3142 aa19■□□□□ 0.63
VPS28-213ENST00000530983 TMEM221A6NGB7 291 aa19■□□□□ 0.63
VPS28-213ENST00000530983 OR6C75A6NL08 312 aa19■□□□□ 0.63
VPS28-213ENST00000530983 IQCF5A8MTL0 148 aa19■□□□□ 0.63
VPS28-213ENST00000530983 GPR39O43194 453 aa19■□□□□ 0.63
VPS28-213ENST00000530983 CAPN1P07384 714 aa19■□□□□ 0.63
VPS28-213ENST00000530983 G6PDP11413 515 aa19■□□□□ 0.63
VPS28-213ENST00000530983 CDH1P12830 882 aa19■□□□□ 0.63
VPS28-213ENST00000530983 TTKP33981 857 aa19■□□□□ 0.63
VPS28-213ENST00000530983 CLCN4P51793 760 aa19■□□□□ 0.63
VPS28-213ENST00000530983 KPNA1P52294 538 aaPredicted RBP19■□□□□ 0.63
VPS28-213ENST00000530983 CDH4P55283 916 aa19■□□□□ 0.63
VPS28-213ENST00000530983 AAK1Q2M2I8 961 aa19■□□□□ 0.63
VPS28-213ENST00000530983 C18orf21Q32NC0 220 aaPredicted RBP19■□□□□ 0.63
VPS28-213ENST00000530983 ANKDD1AQ495B1 522 aa19■□□□□ 0.63
VPS28-213ENST00000530983 ZRANB3Q5FWF4 1079 aa19■□□□□ 0.63
VPS28-213ENST00000530983 OTUD3Q5T2D3 398 aaPredicted RBP19■□□□□ 0.63
VPS28-213ENST00000530983 MFSD14CQ5VZR4 134 aa19■□□□□ 0.63
VPS28-213ENST00000530983 CCSAPQ6IQ19 270 aaPredicted RBP19■□□□□ 0.63
VPS28-213ENST00000530983 TMEM214Q6NUQ4 689 aaKnown RBP19■□□□□ 0.63
VPS28-213ENST00000530983 IFNL1Q8IU54 200 aa19■□□□□ 0.63
VPS28-213ENST00000530983 GIPC2Q8TF65 315 aa19■□□□□ 0.63
VPS28-213ENST00000530983 FAM193BQ96PV7 902 aaPredicted RBP19■□□□□ 0.63
VPS28-213ENST00000530983 SARS2Q9NP81 518 aaKnown RBP19■□□□□ 0.63
VPS28-213ENST00000530983 NEUROG3Q9Y4Z2 214 aa19■□□□□ 0.63
VPS28-213ENST00000530983 RAI2Q9Y5P3 530 aa19■□□□□ 0.63
VPS28-213ENST00000530983 ANKRD66B4E2M5 251 aa19■□□□□ 0.63
VPS28-213ENST00000530983 F11P03951 625 aa19■□□□□ 0.63
VPS28-213ENST00000530983 MBTPS1Q14703 1052 aa19■□□□□ 0.63
VPS28-213ENST00000530983 CRY1Q16526 586 aa19■□□□□ 0.63
VPS28-213ENST00000530983 SLC44A4Q53GD3 710 aa19■□□□□ 0.63
VPS28-213ENST00000530983 EFHBQ8N7U6 833 aa19■□□□□ 0.63
VPS28-213ENST00000530983 PKD2L2Q9NZM6 624 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms