RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 SRRDQ9UH36 339 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 POLR3HQ9Y535 204 aaPredicted RBP11.14□□□□□ -0.63
TCOF1-211ENST00000513346 TIMM22Q9Y584 194 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 SDK1Q7Z5N4 2213 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 CEP290O15078 2479 aa11.14□□□□□ -0.63
TCOF1-211ENST00000513346 A0A1W2PRG6 482 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 SLC28A1O00337 649 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 FGF10O15520 208 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 B4GALT4O60513 344 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 CPNE3O75131 537 aaKnown RBP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 IL7RP16871 459 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 ZNF7P17097 686 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 ITGA2P17301 1181 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 NMBRP28336 390 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 ICAM3P32942 547 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 BRCC3P46736 316 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 GSK3BP49841 420 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 SLC25A11Q02978 314 aaKnown RBP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 SYT16Q17RD7 645 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 SLC25A52Q3SY17 297 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 RAP1GAP2Q684P5 730 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 SYT12Q8IV01 421 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 ZZZ3Q8IYH5 903 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 PHC3Q8NDX5 983 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 PTCD2Q8WV60 388 aaKnown RBP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 ZNF516Q92618 1163 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 HDAC2Q92769 488 aaKnown RBP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 AURKBQ96GD4 344 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 ITCHQ96J02 903 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 SMAD5Q99717 465 aaKnown RBP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 KCNS3Q9BQ31 491 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 NTPCRQ9BSD7 190 aaKnown RBP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 HERPUD2Q9BSE4 406 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 C2orf49Q9BVC5 232 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 B3GNT5Q9BYG0 378 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 ANKRD60Q9BZ19 345 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 SLC22A4Q9H015 551 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 CCM2LQ9NUG4 571 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 DTLQ9NZJ0 730 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 PCDHGA4Q9Y5G9 962 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 LTBP4Q8N2S1 1624 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 H3BMQ9 156 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 SCAMP3O14828 347 aaKnown RBP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 TREHO43280 583 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 DLX3O60479 287 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 VNN1O95497 513 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 IFI30P13284 250 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 GPD2P43304 727 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 TXNL4AP83876 142 aaKnown RBP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 CRHR2Q13324 411 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 FBXL19Q6PCT2 694 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 Q6ZNX1 250 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 ELMOD2Q8IZ81 293 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 SCML4Q8N228 414 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 COG8Q96MW5 612 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 MUS81Q96NY9 551 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 TSPAN18Q96SJ8 248 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 GBA3Q9H227 469 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 ARHGEF4Q9NR80 690 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 DNMT3LQ9UJW3 386 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 ITM2BQ9Y287 266 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 SLC27A5Q9Y2P5 690 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 TMEM233B4DJY2 109 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 NT5C1B-RDH14C9J2C7 533 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 DYRK3O43781 588 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 OTCP00480 354 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 INHAP05111 366 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 CTNNB1P35222 781 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 CTSKP43235 329 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 PTPN9P43378 593 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 MRPS5P82675 430 aaKnown RBP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 ZNF460Q14592 562 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 GPR158Q5T848 1215 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 CDC73Q6P1J9 531 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 PTCHD4Q6ZW05 846 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 SELENOMQ8WWX9 145 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 POLE4Q9NR33 117 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 SMOXQ9NWM0 555 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 CFL2Q9Y281 166 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 H3BMM5 538 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 ZBTB14O43829 449 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 SORBS2O94875 1100 aaKnown RBP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 FYNP06241 537 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 ASGR1P07306 291 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 COX7A2P14406 83 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 ITGB6P18564 788 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 MYF6P23409 242 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 NRG1Q02297 640 aaPredicted RBP11.13□□□□□ -0.63
TCOF1-211ENST00000513346 FOXM1Q08050 763 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 LCP2Q13094 533 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 GRM2Q14416 872 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 MEP1AQ16819 746 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 ARMC12Q5T9G4 340 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 SYCE2Q6PIF2 218 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 GLT6D1Q7Z4J2 308 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 SLC34A3Q8N130 599 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 UXS1Q8NBZ7 420 aa11.13□□□□□ -0.63
TCOF1-211ENST00000513346 TRIM8Q9BZR9 551 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms