RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ACTR1AP61163 376 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 BRD3Q15059 726 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 ELOCQ15369 112 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 SEPT7Q16181 437 aaKnown RBP11.71□□□□□ -0.53
CUX1-210ENST00000497815 DEFB133Q30KQ1 61 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 BCL7AQ4VC05 210 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 CTSL3PQ5NE16 218 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 NAPRTQ6XQN6 538 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 KIAA0408Q6ZU52 694 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 C11orf96Q7Z7L8 435 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 AMZ2Q86W34 360 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 LRRC6Q86X45 466 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 FSTL5Q8N475 847 aaPredicted RBP11.71□□□□□ -0.53
CUX1-210ENST00000497815 LKAAEAR1Q8TD35 194 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 SAP25Q8TEE9 199 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 UBLCP1Q8WVY7 318 aaPredicted RBP11.71□□□□□ -0.53
CUX1-210ENST00000497815 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.71□□□□□ -0.533e-7■■■■■ 94
CUX1-210ENST00000497815 NDNQ99608 321 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 CCM2Q9BSQ5 444 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 GSDMCQ9BYG8 508 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 TXLNGYQ9BZA5 131 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 P2RY12Q9H244 342 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 CCDC68Q9H2F9 335 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 SARS2Q9NP81 518 aaKnown RBP11.71□□□□□ -0.53
CUX1-210ENST00000497815 DNAAF2Q9NVR5 837 aaKnown RBP11.71□□□□□ -0.53
CUX1-210ENST00000497815 TXNDC16Q9P2K2 825 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 GNPTGQ9UJJ9 305 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 TMEM131Q92545 1883 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 DMDP11532 3685 aa11.71□□□□□ -0.53
CUX1-210ENST00000497815 TP53BP1Q12888 1972 aaPredicted RBP11.7□□□□□ -0.54
CUX1-210ENST00000497815 GPR179Q6PRD1 2367 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 A0A087WUV0 522 aaPredicted RBP11.7□□□□□ -0.54
CUX1-210ENST00000497815 B4DGG1 531 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 YY2O15391 372 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 RIPK2O43353 540 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 NIPSNAP2O75323 286 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 FTH1P02794 183 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 ESR1P03372 595 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 ANXA6P08133 673 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 PKMP14618 531 aaKnown RBP11.7□□□□□ -0.54
CUX1-210ENST00000497815 VCLP18206 1134 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 CHRM3P20309 590 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 RPS3P23396 243 aaKnown RBP eCLIP11.7□□□□□ -0.541e-7■■■■□ 20.3
CUX1-210ENST00000497815 LEPRP48357 1165 aaKnown RBP11.7□□□□□ -0.54
CUX1-210ENST00000497815 CSE1LP55060 971 aaKnown RBP11.7□□□□□ -0.54
CUX1-210ENST00000497815 LRP8Q14114 963 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 BOP1Q14137 746 aaKnown RBP11.7□□□□□ -0.54
CUX1-210ENST00000497815 NFE2L1Q14494 772 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 UAP1Q16222 522 aaPredicted RBP11.7□□□□□ -0.54
CUX1-210ENST00000497815 STPG1Q5TH74 334 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 FAM83HQ6ZRV2 1179 aaPredicted RBP11.7□□□□□ -0.54
CUX1-210ENST00000497815 SLC26A11Q86WA9 606 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 GKN2Q86XP6 184 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 NRROSQ86YC3 692 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 CFAP206Q8IYR0 622 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 LILRA3Q8N6C8 439 aaPredicted RBP11.7□□□□□ -0.54
CUX1-210ENST00000497815 EID2Q8N6I1 236 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 GPATCH11Q8N954 259 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 FAM46DQ8NEK8 389 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 GPBAR1Q8TDU6 330 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 AENQ8WTP8 325 aaKnown RBP11.7□□□□□ -0.54
CUX1-210ENST00000497815 SETD7Q8WTS6 366 aaKnown RBP11.7□□□□□ -0.54
CUX1-210ENST00000497815 ELMO1Q92556 727 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 BIRC8Q96P09 236 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 CYTH2Q99418 400 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 TIMM29Q9BSF4 260 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 TSSK1BQ9BXA7 367 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 DPEP2Q9H4A9 486 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 SPATS2LQ9NUQ6 558 aaKnown RBP11.7□□□□□ -0.54
CUX1-210ENST00000497815 NSMCE4AQ9NXX6 385 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 SIRPGQ9P1W8 387 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 RABGEF1Q9UJ41 708 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 RAB21Q9UL25 225 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 PCDHB1Q9Y5F3 818 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 LRP4O75096 1905 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 GON4LQ3T8J9 2241 aa11.7□□□□□ -0.54
CUX1-210ENST00000497815 TRBV23OR9-2A0A075B6M9 112 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 NEMP2A6NFY4 417 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 MGAT4DA6NG13 374 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 PDZK1P1A8MUH7 402 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 E5RI56 91 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 LMO7DNF2Z398 122 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 POC1B-GALNT4F8VUJ3 575 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 F8W8V4 182 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 QSOX1O00391 747 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 PCDHGA12O60330 932 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 FAM155BO75949 473 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 C1QAP02745 245 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 TUBBP07437 444 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 ZNF883P0CG24 379 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 SAT1P21673 171 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 RPL10P27635 214 aaKnown RBP11.69□□□□□ -0.54
CUX1-210ENST00000497815 ARHGAP8P85298 464 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 SLC29A2Q14542 456 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 SUZ12Q15022 739 aaKnown RBP11.69□□□□□ -0.54
CUX1-210ENST00000497815 SYTL3Q4VX76 610 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 RBM20Q5T481 1227 aaKnown RBP11.69□□□□□ -0.54
CUX1-210ENST00000497815 ZNF549Q6P9A3 640 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 ZNF449Q6P9G9 518 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 EMBQ6PCB8 327 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms