RNA–Protein interactions for RNA: ENST00000496197.5

PTPN7-218, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,463 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-218	ENST00000496197	CTBS	Q01459	385 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	GTF2H3	Q13889	308 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	PRRT3	Q5FWE3	981 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	RNF187	Q5TA31	235 aa	Predicted RBP	13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	FBXO38	Q6PIJ6	1188 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	KANSL1	Q7Z3B3	1105 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	PIM3	Q86V86	326 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	LRRC6	Q86X45	466 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	GALNT13	Q8IUC8	556 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	SFTPA2	Q8IWL1	248 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	GIMAP7	Q8NHV1	300 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	DCAKD	Q8WVC6	231 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	SLC44A1	Q8WWI5	657 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	CDKL2	Q92772	493 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	SKA1	Q96BD8	255 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	PAFAH2	Q99487	392 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	RBBP8	Q99708	897 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	OLFM1	Q99784	485 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	AARSD1	Q9BTE6	412 aa	Known RBP	13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	DHRS4	Q9BTZ2	278 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	GTPBP2	Q9BX10	602 aa	Known RBP	13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	NUSAP1	Q9BXS6	441 aa	Known RBP	13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	RMI1	Q9H9A7	625 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	NCDN	Q9UBB6	729 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	CTNNAL1	Q9UBT7	734 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	GPR34	Q9UPC5	381 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	KCNK6	Q9Y257	313 aa		13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197	MTO1	Q9Y2Z2	717 aa	Known RBP	13.28	□□□□□ -0.28
PTPN7-218	ENST00000496197		A0A1B0GTQ1	180 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	EXOC1L	A0A1B0GW35	172 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	GPR89A	B7ZAQ6	455 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	POP7	O75817	140 aa	Known RBP	13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	AP2A2	O94973	939 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	EML2	O95834	649 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	GPR89B	P0CG08	455 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	GIMD1	P0DJR0	217 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	PKM	P14618	531 aa	Known RBP	13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	CCR7	P32248	378 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	GMPR	P36959	345 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	GP5	P40197	560 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	BMPR2	Q13873	1038 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	NFE2L1	Q14494	772 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	GATAD2A	Q86YP4	633 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	OXR1	Q8N573	874 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	MINDY1	Q8N5J2	469 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	ZNF548	Q8NEK5	533 aa	Predicted RBP	13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	HEXDC	Q8WVB3	486 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	SCG3	Q8WXD2	468 aa	Known RBP	13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	VPS39	Q96JC1	886 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	LINC00615	Q96LM1	132 aa	Predicted RBP	13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	TTC1	Q99614	292 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	CPNE1	Q99829	537 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	RHOJ	Q9H4E5	214 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	CAB39L	Q9H9S4	337 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	KLC4	Q9NSK0	619 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	GNPTG	Q9UJJ9	305 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	DNAJC16	Q9Y2G8	782 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	NFS1	Q9Y697	457 aa		13.27	□□□□□ -0.29
PTPN7-218	ENST00000496197	FAM95C	A0A1B0GW59	222 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	CDX4	O14627	284 aa	Predicted RBP	13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	KMO	O15229	486 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	TRIM16	O95361	564 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	ESR1	P03372	595 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	OR56A5	P0C7T3	313 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	DGKA	P23743	735 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	EPHA8	P29322	1005 aa	Predicted RBP	13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	PPARG	P37231	505 aa	Predicted RBP	13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	RXRG	P48443	463 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	CLCN7	P51798	805 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	LIMK2	P53671	638 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	CSE1L	P55060	971 aa	Known RBP	13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	NAB1	Q13506	487 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	ZNF460	Q14592	562 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	INSC	Q1MX18	579 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	KLHL38	Q2WGJ6	581 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	MAP9	Q49MG5	647 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	HECTD2	Q5U5R9	776 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	PTRHD1	Q6GMV3	140 aa	Known RBP	13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	CEP97	Q8IW35	865 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	SLC25A45	Q8N413	288 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	GPATCH11	Q8N954	259 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	GPBAR1	Q8TDU6	330 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	LMX1A	Q8TE12	382 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	EPS8L3	Q8TE67	593 aa	Known RBP	13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	HNRNPLL	Q8WVV9	542 aa	Known RBP	13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	SLC13A1	Q9BZW2	595 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	TRNAU1AP	Q9NX07	287 aa	Known RBP	13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	NSMCE4A	Q9NXX6	385 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	CDYL	Q9Y232	598 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	PCDHB1	Q9Y5F3	818 aa		13.26	□□□□□ -0.29
PTPN7-218	ENST00000496197	FOXO6	A8MYZ6	492 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	GDF9	O60383	454 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	SYP	P08247	313 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	ITGA2B	P08514	1039 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	NUDT17	P0C025	328 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	PLA2G5	P39877	138 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	PREP	P48147	710 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	ARHGAP8	P85298	464 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	CSRP2	Q16527	193 aa		13.25	□□□□□ -0.29
PTPN7-218	ENST00000496197	SLC30A9	Q6PML9	568 aa		13.25	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms