RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 KLC4Q9NSK0 619 aa14.33□□□□□ -0.11
BRCA1-223ENST00000494123 UCKL1Q9NWZ5 548 aa14.33□□□□□ -0.11
BRCA1-223ENST00000494123 FAM8A1Q9UBU6 413 aa14.33□□□□□ -0.11
BRCA1-223ENST00000494123 RAB21Q9UL25 225 aa14.33□□□□□ -0.11
BRCA1-223ENST00000494123 KCNK6Q9Y257 313 aa14.33□□□□□ -0.11
BRCA1-223ENST00000494123 DNAJC16Q9Y2G8 782 aa14.33□□□□□ -0.11
BRCA1-223ENST00000494123 PLEKHM1Q9Y4G2 1056 aa14.33□□□□□ -0.11
BRCA1-223ENST00000494123 DNMT3AQ9Y6K1 912 aaPredicted RBP14.33□□□□□ -0.11
BRCA1-223ENST00000494123 PIKFYVEQ9Y2I7 2098 aa14.33□□□□□ -0.11
BRCA1-223ENST00000494123 KLHL33A6NCF5 533 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 FAM159BA6NKW6 160 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 H3BMM5 538 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 CDX4O14627 284 aaPredicted RBP14.33□□□□□ -0.12
BRCA1-223ENST00000494123 FFAR2O15552 330 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 SGTAO43765 313 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 PCDHGA12O60330 932 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 PIAS1O75925 651 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 ANXA6P08133 673 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 CELA2BP08218 269 aaPredicted RBP14.33□□□□□ -0.12
BRCA1-223ENST00000494123 AK4P27144 223 aaPredicted RBP14.33□□□□□ -0.12
BRCA1-223ENST00000494123 ACTR1BP42025 376 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 CD151P48509 253 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 ADARP55265 1226 aaKnown RBP14.33□□□□□ -0.12
BRCA1-223ENST00000494123 ACTR1AP61163 376 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 MAP9Q49MG5 647 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 UBAP2Q5T6F2 1119 aaKnown RBP14.33□□□□□ -0.12
BRCA1-223ENST00000494123 SLC30A9Q6PML9 568 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 C11orf96Q7Z7L8 435 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 GALNT7Q86SF2 657 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 SDR16C5Q8N3Y7 309 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 PPM1NQ8N819 430 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 CCL4L1Q8NHW4 92 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 UHMK1Q8TAS1 419 aaKnown RBP14.33□□□□□ -0.12
BRCA1-223ENST00000494123 GPBAR1Q8TDU6 330 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 SAP25Q8TEE9 199 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 AENQ8WTP8 325 aaKnown RBP14.33□□□□□ -0.12
BRCA1-223ENST00000494123 UBLCP1Q8WVY7 318 aaPredicted RBP14.33□□□□□ -0.12
BRCA1-223ENST00000494123 PANX3Q96QZ0 392 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 CCM2Q9BSQ5 444 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 TXLNGYQ9BZA5 131 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 SMYD2Q9NRG4 433 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 CSNK1G3Q9Y6M4 447 aa14.33□□□□□ -0.12
BRCA1-223ENST00000494123 MGAT4DA6NG13 374 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 C4orf47A7E2U8 309 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 CXorf49A8MYA2 514 aaPredicted RBP14.32□□□□□ -0.12
BRCA1-223ENST00000494123 E5RI56 91 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 RIPK2O43353 540 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 GDF9O60383 454 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 KCNJ13O60928 360 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 TRIM16O95361 564 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 AHSGP02765 367 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 ALPPL2P10696 532 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 PKMP14618 531 aaKnown RBP14.32□□□□□ -0.12
BRCA1-223ENST00000494123 ITGB6P18564 788 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 ARHGAP8P85298 464 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 NAB1Q13506 487 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 DEFB133Q30KQ1 61 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 INAVAQ3KP66 663 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 CNSTQ6PJW8 725 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 KIAA2013Q8IYS2 634 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 OR2L2Q8NH16 312 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 ELMO1Q92556 727 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 LINC00615Q96LM1 132 aaPredicted RBP14.32□□□□□ -0.12
BRCA1-223ENST00000494123 BIRC8Q96P09 236 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 CPNE1Q99829 537 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 ACSS3Q9H6R3 686 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 SLC23A2Q9UGH3 650 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 RABGEF1Q9UJ41 708 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 PCDHGB2Q9Y5G2 931 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 PSAT1Q9Y617 370 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 COMMD10Q9Y6G5 202 aa14.32□□□□□ -0.12
BRCA1-223ENST00000494123 ZFC3H1O60293 1989 aaKnown RBP14.31□□□□□ -0.12
BRCA1-223ENST00000494123 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.31□□□□□ -0.12
BRCA1-223ENST00000494123 LMO7DNF2Z398 122 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 YY2O15391 372 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 SNX2O60749 519 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 ABHD2P08910 425 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 GSTM1P09488 218 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 CHRM3P20309 590 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 IDSP22304 550 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 ABCG1P45844 678 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 GSTM4Q03013 218 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 SLC14A1Q13336 389 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 BOP1Q14137 746 aaKnown RBP14.31□□□□□ -0.12
BRCA1-223ENST00000494123 EFTUD2Q15029 972 aaKnown RBP eCLIP14.31□□□□□ -0.12
BRCA1-223ENST00000494123 KLHL38Q2WGJ6 581 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 SYTL3Q4VX76 610 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 CTSL3PQ5NE16 218 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 NRROSQ86YC3 692 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 KRT222Q8N1A0 295 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 SLC25A45Q8N413 288 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 FAM46DQ8NEK8 389 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 HM13Q8TCT9 377 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 FAM122AQ96E09 287 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 MRRFQ96E11 262 aaKnown RBP14.31□□□□□ -0.12
BRCA1-223ENST00000494123 ATXN7L3BQ96GX2 97 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 FUT8Q9BYC5 575 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 TAAR2Q9P1P5 351 aa14.31□□□□□ -0.12
BRCA1-223ENST00000494123 RIF1Q5UIP0 2472 aaKnown RBP14.31□□□□□ -0.12
BRCA1-223ENST00000494123 LAMA1P25391 3075 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms