RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 FAM198BQ6UWH4 519 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 CERS6Q6ZMG9 384 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 C11orf96Q7Z7L8 435 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 RAB43Q86YS6 212 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 NEK11Q8NG66 645 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 CPT1BQ92523 772 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 IP6K3Q96PC2 410 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 SYT11Q9BT88 431 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 MLPHQ9BV36 600 aaPredicted RBP13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 NUP85Q9BW27 656 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 TRIM7Q9C029 511 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 UNKQ9C0B0 810 aaKnown RBP13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 ILKAPQ9H0C8 392 aaPredicted RBP13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 ARFGAP3Q9NP61 516 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 RAD18Q9NS91 495 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 TAS2R14Q9NYV8 317 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 BTRCQ9Y297 605 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 PCDHGA10Q9Y5H3 936 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 COPG1Q9Y678 874 aaKnown RBP13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 MDC1Q14676 2089 aaKnown RBP13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 NUP210LQ5VU65 1888 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 OR5K3A6NET4 321 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 MATN3O15232 486 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 KCNJ13O60928 360 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 ZBTB11O95625 1053 aaPredicted RBP13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 ITGA3P26006 1051 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 ZNF165P49910 485 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 DRG2P55039 364 aaKnown RBP13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 GALNT2Q10471 571 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 ATP1A4Q13733 1029 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 GPR19Q15760 415 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 SMTNL2Q2TAL5 461 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 CDKAL1Q5VV42 579 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 LCN10Q6JVE6 187 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 TM9SF4Q92544 642 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 INPP5DQ92835 1189 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 EID2BQ96D98 161 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 AGPAT4Q9NRZ5 378 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 DTLQ9NZJ0 730 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 WDR37Q9Y2I8 494 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 FER1L5A0AVI2 2057 aa13.92□□□□□ -0.18
PRPF40A-211ENST00000493468 UBA6A0AVT1 1052 aaPredicted RBP13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 IPO13O94829 963 aaKnown RBP13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 CDK14O94921 469 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 FERP16591 822 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 UBE2HP62256 183 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 DMPKQ09013 629 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 NIPAL4Q0D2K0 466 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 MYBPC3Q14896 1274 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 NCF4Q15080 339 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 TMTC4Q5T4D3 741 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 Q6ZS92 163 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 ZC3H18Q86VM9 953 aaKnown RBP13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 MCEMP1Q8IX19 187 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 GPR26Q8NDV2 337 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 GPR150Q8NGU9 434 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 TEKT4Q8WW24 435 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 VPS35Q96QK1 796 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 DPH2Q9BQC3 489 aaPredicted RBP13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 DHRS4Q9BTZ2 278 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 ADGRE3Q9BY15 652 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 XPO4Q9C0E2 1151 aaKnown RBP13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 FANCEQ9HB96 536 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 ZFYVE1Q9HBF4 777 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 SYTL2Q9HCH5 934 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 PCDH18Q9HCL0 1135 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 RBM22Q9NW64 420 aaKnown RBP eCLIP13.91□□□□□ -0.181e-9■■■■■ 40.4
PRPF40A-211ENST00000493468 NTNG1Q9Y2I2 539 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 SCINQ9Y6U3 715 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 MED13LQ71F56 2210 aa13.91□□□□□ -0.18
PRPF40A-211ENST00000493468 SVILO95425 2214 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 NF1P21359 2839 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 LRRTM2O43300 516 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 MFSD11O43934 449 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 IGHEP01854 428 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 MSL3P1P0C860 447 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 RARAP10276 462 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 CCNCP24863 283 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 HADHAP40939 763 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 RAPSNQ13702 412 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 PLCL1Q15111 1095 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 RPE65Q16518 533 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 ALS2CLQ60I27 953 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 SP5Q6BEB4 398 aaPredicted RBP13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 MRGPREQ86SM8 312 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 OOSP2Q86WS3 158 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 SYTL1Q8IYJ3 562 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 HSPH1Q92598 858 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 FER1L6-AS2Q96M78 137 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 TSGA13Q96PP4 275 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 PCMTD2Q9NV79 361 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 PADI2Q9Y2J8 665 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 TTLL3Q9Y4R7 772 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 CCDC168Q8NDH2 2452 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 CCDC88CQ9P219 2028 aa13.9□□□□□ -0.18
PRPF40A-211ENST00000493468 ANKRD12Q6UB98 2062 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 E2F3O00716 465 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 HLA-DQB2P05538 268 aa13.89□□□□□ -0.19
PRPF40A-211ENST00000493468 MMP2P08253 660 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms