RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ZMYND11Q15326 602 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 MCMDC2Q4G0Z9 681 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 GLE1Q53GS7 698 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 TMTC4Q5T4D3 741 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 RNASEH2BQ5TBB1 312 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 ANKRD40Q6AI12 368 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 FAM173BQ6P4H8 233 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 ZDHHC24Q6UX98 284 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 DCDC5Q6ZRR9 648 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 UNC13DQ70J99 1090 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 TMCO2Q7Z6W1 182 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 CEP57Q86XR8 500 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 FAM114A1Q8IWE2 563 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 SLC43A2Q8N370 569 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 ARFGAP2Q8N6H7 521 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 EIF1ADQ8N9N8 165 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 DNAAF3Q8N9W5 541 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 RBM15BQ8NDT2 890 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 ZNF398Q8TD17 642 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 GLMPQ8WWB7 406 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 C14orf79Q96F83 325 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 ZDHHC12Q96GR4 267 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 ERO1AQ96HE7 468 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 ZBTB45Q96K62 511 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 SNX27Q96L92 541 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 CAMK1GQ96NX5 476 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 SMC6Q96SB8 1091 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 PLIN2Q99541 437 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 C19orf43Q9BQ61 176 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 ZSCAN5AQ9BUG6 496 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 TRIM62Q9BVG3 475 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 POLR1EQ9GZS1 481 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 AZI2Q9H6S1 392 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 LY9Q9HBG7 655 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 SPACA1Q9HBV2 294 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 SYTL2Q9HCH5 934 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 NUDT15Q9NV35 164 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 FKBP14Q9NWM8 211 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 ANKMY1Q9P2S6 941 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 MBD2Q9UBB5 411 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 SLCO3A1Q9UIG8 710 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 ANAPC2Q9UJX6 822 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 GAB2Q9UQC2 676 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 MTMR6Q9Y217 621 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 EXOC6BQ9Y2D4 811 aa4.82□□□□□ -1.64
CCDC88A-210ENST00000468534 CARMIL1Q5VZK9 1371 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 PLEKHG2Q9H7P9 1386 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 TTC26A0AVF1 554 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 FRMD3A2A2Y4 597 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 TARSL2A2RTX5 802 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 HEATR9A2RTY3 570 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 CD8B2A6NJW9 211 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 E9PI62 339 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 H0Y8G0 127 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 TSPAN4O14817 238 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 PER2O15055 1255 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 KCNQ3O43525 872 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 DNPH1O43598 174 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 PRDM1O75626 825 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 RHBDL1O75783 438 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 OR2C1O95371 312 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 GNA14O95837 355 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 KRT8P05787 483 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 SPARCP09486 303 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 WEE2P0C1S8 567 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 UROSP10746 265 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 SRCP12931 536 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 IL1R1P14778 569 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 CREB1P16220 341 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 CKMT2P17540 419 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 SP100P23497 879 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 AHCYP23526 432 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 AXLP30530 894 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 ICAM3P32942 547 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 CARSP49589 748 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 RPS6KA3P51812 740 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 NME5P56597 212 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 GSCP56915 257 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 SSTP61278 116 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 TPM4P67936 248 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 ID2Q02363 134 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 GAD2Q05329 585 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 TBL3Q12788 808 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 ALCAMQ13740 583 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 SNTB1Q13884 538 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 CYLC2Q14093 348 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 LEXMQ3ZCV2 418 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 HERC4Q5GLZ8 1057 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 TTC22Q5TAA0 569 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 CST9LP1Q5W188 147 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 DENND2CQ68D51 928 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 ATL3Q6DD88 541 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 KLHL35Q6PF15 583 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 NCEH1Q6PIU2 408 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 RANBP10Q6VN20 620 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 CHST9Q7L1S5 443 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 KCTD20Q7Z5Y7 419 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 GPR142Q7Z601 462 aa4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 C16orf71Q8IYS4 520 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-210ENST00000468534 KDM8Q8N371 416 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms