RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 SLC41A2Q96JW4 573 aa13.03□□□□□ -0.32
HMGB3-204ENST00000448905 TEKT5Q96M29 485 aa13.03□□□□□ -0.32
HMGB3-204ENST00000448905 IL26Q9NPH9 171 aa13.03□□□□□ -0.32
HMGB3-204ENST00000448905 SEMA5BQ9P283 1151 aa13.03□□□□□ -0.32
HMGB3-204ENST00000448905 G3BP2Q9UN86 482 aaKnown RBP13.03□□□□□ -0.32
HMGB3-204ENST00000448905 FARSAQ9Y285 508 aaKnown RBP13.03□□□□□ -0.32
HMGB3-204ENST00000448905 PKP3Q9Y446 797 aa13.03□□□□□ -0.32
HMGB3-204ENST00000448905 BSNQ9UPA5 3926 aa13.03□□□□□ -0.32
HMGB3-204ENST00000448905 GYPCP04921 128 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 PYGMP11217 842 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 FOLR1P15328 257 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 PTPN4P29074 926 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 CD97P48960 835 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 MLLT10P55197 1068 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 DYNLT1P63172 113 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 XRCC4Q13426 336 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 SEMA5AQ13591 1074 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 ITGA9Q13797 1035 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 KRT33BQ14525 404 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 RPE65Q16518 533 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 LONRF2Q1L5Z9 754 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 C4orf17Q53FE4 359 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 DNTTIP2Q5QJE6 756 aaKnown RBP13.02□□□□□ -0.33
HMGB3-204ENST00000448905 PWWP2BQ6NUJ5 590 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 TMEM220Q6QAJ8 160 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 SYVN1Q86TM6 617 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 CPNE8Q86YQ8 564 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 RHOT1Q8IXI2 618 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 CT55Q8WUE5 264 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 TFB1MQ8WVM0 346 aaKnown RBP13.02□□□□□ -0.33
HMGB3-204ENST00000448905 RNF25Q96BH1 459 aaPredicted RBP13.02□□□□□ -0.33
HMGB3-204ENST00000448905 CCDC42Q96M95 316 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 ACTL8Q9H568 366 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 FGF21Q9NSA1 209 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 KCND1Q9NSA2 647 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 HRASLS2Q9NWW9 162 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 UBP1Q9NZI7 540 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 IFNKQ9P0W0 207 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 COLEC10Q9Y6Z7 277 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 NAV2Q8IVL1 2488 aa13.02□□□□□ -0.33
HMGB3-204ENST00000448905 UBR5O95071 2799 aaPredicted RBP13.01□□□□□ -0.33
HMGB3-204ENST00000448905 IGHV5-51A0A0C4DH38 117 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 GLYATL1P3A0A0U1RQE8 302 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 LOC285095A0A1B0GVY8 99 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 SSU72P8A0A1W2PR75 194 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 CLEC18AA5D8T8 446 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 AURKAO14965 403 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 KRT1P04264 644 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 FURINP09958 794 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 MSH3P20585 1137 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 VARSP26640 1264 aaKnown RBP13.01□□□□□ -0.33
HMGB3-204ENST00000448905 SPAM1P38567 509 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 PGDP52209 483 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 WNT3AP56704 352 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 DMPKQ09013 629 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 GSE1Q14687 1217 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 UGT8Q16880 541 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 FHL5Q5TD97 284 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 CLEC18BQ6UXF7 455 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 NPNTQ6UXI9 565 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 PID1Q7Z2X4 250 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 C11orf96Q7Z7L8 435 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 OOSP2Q86WS3 158 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 LURAP1LQ8IV03 231 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 CARFQ8N187 725 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 CLEC18CQ8NCF0 446 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 RNF31Q96EP0 1072 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 OLFM3Q96PB7 478 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 PSMG3-AS1Q96PY0 264 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 VAT1Q99536 393 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 FERMT1Q9BQL6 677 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 PACSIN1Q9BY11 444 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 ACSS2Q9NR19 701 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 ACSL5Q9ULC5 683 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 PSMD13Q9UNM6 376 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 WDR37Q9Y2I8 494 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 SPO11Q9Y5K1 396 aa13.01□□□□□ -0.33
HMGB3-204ENST00000448905 TLCD2A6NGC4 264 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 C3orf70A6NLC5 250 aaPredicted RBP13□□□□□ -0.33
HMGB3-204ENST00000448905 UGT1A9O60656 530 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 CPNE3O75131 537 aaKnown RBP13□□□□□ -0.33
HMGB3-204ENST00000448905 SCRG1O75711 98 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 ZBTB11O95625 1053 aaPredicted RBP13□□□□□ -0.33
HMGB3-204ENST00000448905 TNNT1P13805 278 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 UGT1A6P19224 532 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 NR1D1P20393 614 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 UGT1A1P22309 533 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 UGT1A4P22310 534 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 AKT1P31749 480 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 CCL11P51671 97 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 GSDMDP57764 484 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 TUBB4BP68371 445 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 PRKAA1Q13131 559 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 TUBB2AQ13885 445 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 TRIM14Q14142 442 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 CHRNA6Q15825 494 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 KHDC1Q4VXA5 237 aaKnown RBP13□□□□□ -0.33
HMGB3-204ENST00000448905 METRNLQ641Q3 311 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 TMEM135Q86UB9 458 aa13□□□□□ -0.33
HMGB3-204ENST00000448905 TMEM126BQ8IUX1 230 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms