RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 MUS81Q96NY9 551 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 TBCDQ9BTW9 1192 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 BOCQ9BWV1 1114 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 ZFP14Q9HCL3 533 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 FARSBQ9NSD9 589 aaKnown RBP13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 IRAK4Q9NWZ3 460 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 UTS2RQ9UKP6 389 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 PDE4DIPQ5VU43 2346 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 ZFC3H1O60293 1989 aaKnown RBP13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 MOXD2PA6NHM9 499 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 H3BNC9 293 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 EEDO75530 441 aaKnown RBP13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 MLYCDO95822 493 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 GPIP06744 558 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 TFPTP0C1Z6 253 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 HOXB8P17481 243 aaPredicted RBP13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 GKP32189 559 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 HSPA7P48741 367 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 PRKG2Q13237 762 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 ZNF177Q13360 481 aaPredicted RBP13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 C16orf72Q14CZ0 275 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 AP5B1Q2VPB7 878 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 FAM151BQ6UXP7 276 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 OR4F6Q8NGB9 312 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 CLHC1Q8NHS4 586 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 FBXO30Q8TB52 745 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 SEPT8Q92599 483 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 MTFMTQ96DP5 389 aaKnown RBP13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 MAGEH1Q9H213 219 aa13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 FAF1Q9UNN5 650 aaPredicted RBP13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 FCF1Q9Y324 198 aaKnown RBP13.38□□□□□ -0.27
HERPUD1-204ENST00000439977 A0A1W2PPW3 197 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 SLC38A8A6NNN8 435 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 BMP10O95393 424 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 EOMESO95936 686 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 CORO1AP31146 461 aaKnown RBP13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 MAGEA11P43364 429 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 SLC11A1P49279 550 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 HMGCS1Q01581 520 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 ANKDD1AQ495B1 522 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 KCTD8Q6ZWB6 473 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 ITIH5Q86UX2 942 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 STK32CQ86UX6 486 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 PEX13Q92968 403 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 NSMCE2Q96MF7 247 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 NPLQ9BXD5 320 aaPredicted RBP13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 ACTL8Q9H568 366 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 TIMMDC1Q9NPL8 285 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 DNMT3LQ9UJW3 386 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 K7ERQ8 282 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 COCHO43405 550 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 VPS4BO75351 444 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 ALDH2P05091 517 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 SLC2A4P14672 509 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 MZF1P28698 734 aaPredicted RBP13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 POLR2IP36954 125 aaKnown RBP13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 SLC11A2P49281 568 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 TUBA4AP68366 448 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 FGD3Q5JSP0 725 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 KLHL35Q6PF15 583 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 CYP20A1Q6UW02 462 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 ABRAXAS1Q6UWZ7 409 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 SPRED1Q7Z699 444 aa13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 TDRKHQ9Y2W6 561 aaKnown RBP13.37□□□□□ -0.27
HERPUD1-204ENST00000439977 H0Y626 953 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 KDELR3O43731 214 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 DFNA5O60443 496 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 TRIM16O95361 564 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 CR2P20023 1033 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 CD247P20963 164 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 CAPGP40121 348 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 TTPAP49638 278 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 RPL38P63173 70 aaKnown RBP13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 RING1Q06587 406 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 GPR17Q13304 367 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 RAB39AQ14964 217 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 ZBED5Q49AG3 693 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 KCTD21Q4G0X4 260 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 CCSAPQ6IQ19 270 aaPredicted RBP13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 XKR5Q6UX68 686 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 DLEU7Q6UYE1 221 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 LYSMD3Q7Z3D4 306 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 GOLGA7Q7Z5G4 137 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 CLEC4FQ8N1N0 589 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 THUMPD3Q9BV44 507 aaKnown RBP13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 SEZ6LQ9BYH1 1024 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 GPR63Q9BZJ6 419 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 CIPCQ9C0C6 399 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 RNF38Q9H0F5 515 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 IPPKQ9H8X2 491 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 RIC8BQ9NVN3 520 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 MARCH5Q9NX47 278 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 FAM234BA2RU67 622 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 STX16O14662 325 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 SYN3O14994 580 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 NOBOXO60393 691 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 UGT1A1P22309 533 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 UGT1A4P22310 534 aa13.36□□□□□ -0.27
HERPUD1-204ENST00000439977 UGT1A3P35503 534 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms