RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 RAB33AQ14088 237 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 CLCA4Q14CN2 919 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 ARMC4Q5T2S8 1044 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 PRSS55Q6UWB4 352 aaPredicted RBP9.72□□□□□ -0.85
USP54-205ENST00000424265 BBS12Q6ZW61 710 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 ZNF767PQ75MW2 155 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 TMEM126BQ8IUX1 230 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 SLC44A2Q8IWA5 706 aaPredicted RBP9.72□□□□□ -0.85
USP54-205ENST00000424265 C8orf33Q9H7E9 229 aaPredicted RBP9.72□□□□□ -0.85
USP54-205ENST00000424265 ACP6Q9NPH0 428 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 OR12D3Q9UGF7 316 aa9.72□□□□□ -0.85
USP54-205ENST00000424265 PTBP2Q9UKA9 531 aaKnown RBP9.72□□□□□ -0.85
USP54-205ENST00000424265 FAM92AA1XBS5 289 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 MTMR11A4FU01 709 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 C2CD4BA6NLJ0 364 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 GABRDO14764 452 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 APOC1P02654 83 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 PDGFAP04085 211 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 KCNA5P22460 613 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 KCNJ1P48048 391 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 NUDT2P50583 147 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 TMBIM6P55061 237 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 GALK2Q01415 458 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 HIF1AQ16665 826 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 DUSP7Q16829 419 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 ATAD3CQ5T2N8 411 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 CRTC3Q6UUV7 619 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 LGI2Q8N0V4 545 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 OR8H3Q8N146 312 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 CPA6Q8N4T0 437 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 TCP10LQ8TDR4 215 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 PABPC5Q96DU9 382 aaKnown RBP9.71□□□□□ -0.85
USP54-205ENST00000424265 ZNF641Q96N77 438 aaPredicted RBP9.71□□□□□ -0.85
USP54-205ENST00000424265 SLC6A17Q9H1V8 727 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 SHOXO15266 292 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 CLDN11O75508 207 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 ADH1CP00326 375 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 EN2P19622 333 aaPredicted RBP9.71□□□□□ -0.85
USP54-205ENST00000424265 TYW3Q6IPR3 259 aaKnown RBP9.71□□□□□ -0.85
USP54-205ENST00000424265 ABRAXAS1Q6UWZ7 409 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 DPY19L3Q6ZPD9 716 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 GOT1L1Q8NHS2 421 aaPredicted RBP9.71□□□□□ -0.85
USP54-205ENST00000424265 SLC44A1Q8WWI5 657 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 SNRNP25Q9BV90 132 aaKnown RBP9.71□□□□□ -0.85
USP54-205ENST00000424265 IGFLR1Q9H665 355 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 EPS8L2Q9H6S3 715 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 GLTPQ9NZD2 209 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 MLXQ9UH92 298 aa9.71□□□□□ -0.85
USP54-205ENST00000424265 CHORDC1Q9UHD1 332 aaPredicted RBP9.71□□□□□ -0.85
USP54-205ENST00000424265 A0A1W2PQH9 124 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 A8MV72 311 aaPredicted RBP9.71□□□□□ -0.86
USP54-205ENST00000424265 ANGPT2O15123 496 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 SERPINA6P08185 405 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 IGFBP4P22692 258 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 HLA-FP30511 346 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 ADRA1BP35368 520 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 TALDO1P37837 337 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 FUT11Q495W5 492 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 CCDC185Q8N715 623 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 ARNTL2Q8WYA1 636 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 SH3YL1Q96HL8 342 aaPredicted RBP9.71□□□□□ -0.86
USP54-205ENST00000424265 FAM84AQ96KN4 292 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 RANBP9Q96S59 729 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 KLF6Q99612 283 aaPredicted RBP9.71□□□□□ -0.86
USP54-205ENST00000424265 EPB41L4BQ9H329 900 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 GRHL1Q9NZI5 618 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 ADA2Q9NZK5 511 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 BET1O15155 118 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 IRAK2O43187 625 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 PAPSS1O43252 624 aaPredicted RBP9.71□□□□□ -0.86
USP54-205ENST00000424265 PIGNO95427 931 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 PIK3R1P27986 724 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 L1CAMP32004 1257 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 YBEYP58557 167 aaPredicted RBP9.71□□□□□ -0.86
USP54-205ENST00000424265 KCNC4Q03721 635 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 LLGL1Q15334 1064 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 MPPE1Q53F39 396 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 RALGPS1Q5JS13 557 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 HES5Q5TA89 166 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 FAM111AQ96PZ2 611 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 KCTD14Q9BQ13 255 aaPredicted RBP9.71□□□□□ -0.86
USP54-205ENST00000424265 MIOSQ9NXC5 875 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 VPS28Q9UK41 221 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 CORINQ9Y5Q5 1042 aa9.71□□□□□ -0.86
USP54-205ENST00000424265 E5RI56 91 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 NFATC1O95644 943 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 OR4Q2P0C623 313 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 IL7P13232 177 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 SMAD3P84022 425 aaKnown RBP9.7□□□□□ -0.86
USP54-205ENST00000424265 TARDBPQ13148 414 aaKnown RBP eCLIP9.7□□□□□ -0.86
USP54-205ENST00000424265 SNTA1Q13424 505 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 DMC1Q14565 340 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 PPP1R3AQ16821 1122 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 BROXQ5VW32 411 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 BEND4Q6ZU67 534 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 RNF157Q96PX1 679 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 CDRT15Q96T59 188 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 SDCBP2Q9H190 292 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 SDHAF3Q9NRP4 125 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 CYTH4Q9UIA0 394 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms