RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ANTXR2P58335 489 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 C1orf94Q6P1W5 598 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 SLC37A3Q8NCC5 494 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 CHST13Q8NET6 341 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 FAM83DQ9H4H8 585 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 PXMP2Q9NR77 195 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 NINJ2Q9NZG7 142 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 TUBE1Q9UJT0 475 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 CRISP1P54107 249 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 PTPN20Q4JDL3 420 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 VTCN1Q7Z7D3 282 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 ALYREFQ86V81 257 aaKnown RBP13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 KLHL36Q8N4N3 616 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 OR10G6Q8NH81 332 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 DNAJC28Q9NX36 388 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 A0A0J9YYE9 177 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 APOC4-APOC2K7ER74 178 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 ENTPD6O75354 484 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 APOC2P02655 101 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 GRK6P43250 576 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 KCNT2Q6UVM3 1135 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 PTF1AQ7RTS3 328 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 PHTF2Q8N3S3 785 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 AENQ8WTP8 325 aaKnown RBP13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 S100A14Q9HCY8 104 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 RIMKLBQ9ULI2 386 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 TRAF6Q9Y4K3 522 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 MAP4K5Q9Y4K4 846 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 PCDHB5Q9Y5E4 795 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 LCHNA4D1U4 455 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 PPP1R3GB7ZBB8 358 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 CSTBP04080 98 aaKnown RBP13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 MOGSQ13724 837 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 UAP1L1Q3KQV9 507 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 C12orf45Q8N5I9 185 aaPredicted RBP13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 TSPAN16Q9UKR8 245 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 CAMSAP1Q5T5Y3 1602 aa13.21□□□□□ -0.3
CCDC88A-204ENST00000413716 HDAC3O15379 428 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 HSPA12AO43301 675 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 TSPAN15O95858 294 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 GLDCP23378 1020 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 EPHA3P29320 983 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 KRBOX4Q5JUW0 171 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 SCP2D1Q9UJQ7 156 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 A0A0J9YVX5 310 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 SH3PXD2BA1X283 911 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 IFNA17P01571 189 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 SLC13A2Q13183 592 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 DAPL1A0PJW8 107 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 C22orf31O95567 290 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 RAB27AP51159 221 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 TIGD6Q17RP2 521 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 HFE2Q6ZVN8 426 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 PSTKQ8IV42 348 aaKnown RBP13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 PACSIN3Q9UKS6 424 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 CASTOR2A6NHX0 329 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 PGLSO95336 258 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 DPYSL3Q14195 570 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 OR14A2Q96R54 314 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 HEPHQ9BQS7 1158 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 A0A0A0MRY4 1105 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 FARS2O95363 451 aaKnown RBP13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 SLC34A2O95436 690 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 ITGA2BP08514 1039 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 OR5T2Q8NGG2 359 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 SPATA13Q96N96 652 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 CIB1Q99828 191 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 ETNK2Q9NVF9 386 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 PCDHGB6Q9Y5F9 930 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 PTPRTO14522 1441 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 CLDN4O14493 209 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 STK35Q8TDR2 534 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 GAL3ST1Q99999 423 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 TEX13DA0A0J9YY54 714 aaPredicted RBP13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 ILVBLA1L0T0 632 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 VSTM5A8MXK1 200 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 PLGP00747 810 aaPredicted RBP13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 YBX3P16989 372 aaKnown RBP eCLIP13.2□□□□□ -0.31e-6■■□□□ 12
CCDC88A-204ENST00000413716 TFEBP19484 476 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 PSMB4P28070 264 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 TNFRSF8P28908 595 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 PARP6Q2NL67 630 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF101Q8IZC7 436 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 MFSD3Q96ES6 412 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 TMEM45AQ9NWC5 275 aa13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 DDX43Q9NXZ2 648 aaKnown RBP13.2□□□□□ -0.3
CCDC88A-204ENST00000413716 ATP6V0D1P61421 351 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ERVK-24P63145 666 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 MERTKQ12866 999 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ADAM7Q9H2U9 754 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 ALKBH4Q9NXW9 302 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 CDC42BPAQ5VT25 1732 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 MMP10P09238 476 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 MAPK3P27361 379 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 CDKN2CP42773 168 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 RNF220Q5VTB9 566 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 FOXR1Q6PIV2 292 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 KCTD9Q7L273 389 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 C17orf64Q86WR6 236 aa13.19□□□□□ -0.3
CCDC88A-204ENST00000413716 SLC38A4Q969I6 547 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms