RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 ANKRD46Q86W74 232 aa18.31■□□□□ 0.52
USP48-204ENST00000400301 LIX1Q8N485 282 aa18.31■□□□□ 0.52
USP48-204ENST00000400301 FIBCD1Q8N539 461 aa18.31■□□□□ 0.52
USP48-204ENST00000400301 SLC13A3Q8WWT9 602 aa18.31■□□□□ 0.52
USP48-204ENST00000400301 MEAF6Q9HAF1 191 aa18.31■□□□□ 0.52
USP48-204ENST00000400301 CSNK1G1Q9HCP0 422 aa18.31■□□□□ 0.52
USP48-204ENST00000400301 KPNA5O15131 536 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 ALDH9A1P49189 494 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 KCTD11Q693B1 232 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 CYP20A1Q6UW02 462 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 TTC9BQ8N6N2 239 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 NELL1Q92832 810 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 BRD9Q9H8M2 597 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 CXorf21Q9HAI6 301 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 RGS17Q9UGC6 210 aaPredicted RBP18.3■□□□□ 0.52
USP48-204ENST00000400301 IFNA14P01570 189 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 HSMCR30P0CW71 290 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 GPC1P35052 558 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 HPCAL1P37235 193 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 CSKP41240 450 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 TRPC1P48995 793 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 SULT1C3Q6IMI6 304 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 PLEKHG4BQ96PX9 1271 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 RANBP9Q96S59 729 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 TRIM8Q9BZR9 551 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 IGSF5Q9NSI5 407 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 ACTR3BQ9P1U1 418 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 RPS6KA6Q9UK32 745 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 TMCC3Q9ULS5 477 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 GMPPBQ9Y5P6 360 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 OR6B1O95007 311 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 CCNA2P20248 432 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 ISCA2Q86U28 154 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 YAF2Q8IY57 180 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 ATL1Q8WXF7 558 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 STARD8Q92502 1023 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 DACT3Q96B18 629 aaPredicted RBP18.3■□□□□ 0.52
USP48-204ENST00000400301 DEFB118Q96PH6 123 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 PSKH2Q96QS6 385 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 TEX12Q9BXU0 123 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 EPS8L2Q9H6S3 715 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 PADI4Q9UM07 663 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 SAMHD1Q9Y3Z3 626 aaKnown RBP18.3■□□□□ 0.52
USP48-204ENST00000400301 CPOXP36551 454 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 PRKCQQ04759 706 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 CNTN1Q12860 1018 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 TRIM32Q13049 653 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 IRF5Q13568 498 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 MPPE1Q53F39 396 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 CCDC149Q6ZUS6 474 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 SH2D5Q6ZV89 423 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 ERMP1Q7Z2K6 904 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 PATL1Q86TB9 770 aaKnown RBP18.3■□□□□ 0.52
USP48-204ENST00000400301 HID1Q8IV36 788 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 SVOPQ8N4V2 548 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 TRPV3Q8NET8 790 aa18.3■□□□□ 0.52
USP48-204ENST00000400301 C11orf84Q9BUA3 381 aaPredicted RBP18.3■□□□□ 0.52
USP48-204ENST00000400301 ZCCHC2Q9C0B9 1178 aaKnown RBP18.3■□□□□ 0.52
USP48-204ENST00000400301 IGFBP6P24592 240 aaPredicted RBP18.29■□□□□ 0.52
USP48-204ENST00000400301 GGT5P36269 586 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 CAPGP40121 348 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 CRATP43155 626 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 KIR3DL1P43629 444 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 EEFSECP57772 596 aaKnown RBP18.29■□□□□ 0.52
USP48-204ENST00000400301 OGFRL1Q5TC84 451 aaPredicted RBP18.29■□□□□ 0.52
USP48-204ENST00000400301 SLC2A7Q6PXP3 512 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 OTULINQ96BN8 352 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 ARHGAP39Q9C0H5 1083 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 PLGRKTQ9HBL7 147 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 NLE1Q9NVX2 485 aaPredicted RBP18.29■□□□□ 0.52
USP48-204ENST00000400301 COL11A2P13942 1736 aaPredicted RBP18.29■□□□□ 0.52
USP48-204ENST00000400301 IFRD1O00458 451 aaPredicted RBP18.29■□□□□ 0.52
USP48-204ENST00000400301 TOP3AQ13472 1001 aaPredicted RBP18.29■□□□□ 0.52
USP48-204ENST00000400301 KCTD21Q4G0X4 260 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 CROCCP3Q8IVE0 287 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 ZCCHC7Q8N3Z6 543 aaKnown RBP18.29■□□□□ 0.52
USP48-204ENST00000400301 KDELR3O43731 214 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 OR1I1O60431 355 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 GJB5O95377 273 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 CYP4B1P13584 511 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 GALK1P51570 392 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 LSM3P62310 102 aaKnown RBP18.29■□□□□ 0.52
USP48-204ENST00000400301 KLHDC10Q6PID8 442 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 KDELC1Q6UW63 502 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 THAP5Q7Z6K1 395 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 STX19Q8N4C7 294 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 GATA6Q92908 595 aa18.29■□□□□ 0.52
USP48-204ENST00000400301 TDRD1Q9BXT4 1180 aaKnown RBP18.29■□□□□ 0.52
USP48-204ENST00000400301 FTH1P02794 183 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 JUNP05412 331 aaKnown RBP18.28■□□□□ 0.52
USP48-204ENST00000400301 GABRB3P28472 473 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 ST13P50502 369 aaKnown RBP18.28■□□□□ 0.52
USP48-204ENST00000400301 RING1Q06587 406 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 MAVSQ7Z434 540 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 TMEM126BQ8IUX1 230 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 TRIM45Q9H8W5 580 aaPredicted RBP18.28■□□□□ 0.52
USP48-204ENST00000400301 DNAJC15Q9Y5T4 150 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 H3BSA7 217 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 NBNO60934 754 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 TULP3O75386 442 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms