RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 TSSK4Q6SA08 328 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 LPCAT2Q7L5N7 544 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 TRIM74Q86UV6 250 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 WDR5BQ86VZ2 330 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 RGL4Q8IZJ4 473 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 FAM160A2Q8N612 972 aaPredicted RBP14.01□□□□□ -0.17
SKA1-202ENST00000398452 DYDC1Q8WWB3 177 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 SREK1Q8WXA9 508 aaKnown RBP14.01□□□□□ -0.17
SKA1-202ENST00000398452 ELMO1Q92556 727 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 ISL2Q96A47 359 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 FAM136AQ96C01 138 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 SGF29Q96ES7 293 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 BIRC8Q96P09 236 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 GPR21Q99679 349 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 TEX101Q9BY14 249 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 FAM126AQ9BYI3 521 aaPredicted RBP14.01□□□□□ -0.17
SKA1-202ENST00000398452 RMI1Q9H9A7 625 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 PRMT8Q9NR22 394 aaPredicted RBP14.01□□□□□ -0.17
SKA1-202ENST00000398452 MID2Q9UJV3 735 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 FBXO4Q9UKT5 387 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.01□□□□□ -0.17
SKA1-202ENST00000398452 OR1A2Q9Y585 309 aa14.01□□□□□ -0.17
SKA1-202ENST00000398452 VPS13AQ96RL7 3174 aa14□□□□□ -0.17
SKA1-202ENST00000398452 SCN8AQ9UQD0 1980 aa14□□□□□ -0.17
SKA1-202ENST00000398452 A0A1W2PPC4 97 aa14□□□□□ -0.17
SKA1-202ENST00000398452 TMEM120BA0PK00 339 aa14□□□□□ -0.17
SKA1-202ENST00000398452 HMX2A2RU54 273 aa14□□□□□ -0.17
SKA1-202ENST00000398452 METTL12A8MUP2 240 aa14□□□□□ -0.17
SKA1-202ENST00000398452 RAD51BO15315 384 aa14□□□□□ -0.17
SKA1-202ENST00000398452 ZWINTO95229 277 aa14□□□□□ -0.17
SKA1-202ENST00000398452 SOD1P00441 154 aa14□□□□□ -0.17
SKA1-202ENST00000398452 LMNAP02545 664 aaKnown RBP14□□□□□ -0.17
SKA1-202ENST00000398452 HOXC4P09017 264 aaPredicted RBP14□□□□□ -0.17
SKA1-202ENST00000398452 NEFHP12036 1026 aa14□□□□□ -0.17
SKA1-202ENST00000398452 CRHR1P34998 444 aa14□□□□□ -0.17
SKA1-202ENST00000398452 TRIM23P36406 574 aa14□□□□□ -0.17
SKA1-202ENST00000398452 SLC26A3P40879 764 aa14□□□□□ -0.17
SKA1-202ENST00000398452 CCNFP41002 786 aa14□□□□□ -0.17
SKA1-202ENST00000398452 KIAA1024LP59773 190 aa14□□□□□ -0.17
SKA1-202ENST00000398452 IL2P60568 153 aa14□□□□□ -0.17
SKA1-202ENST00000398452 SLC18A2Q05940 514 aa14□□□□□ -0.17
SKA1-202ENST00000398452 PDE1CQ14123 709 aaPredicted RBP14□□□□□ -0.17
SKA1-202ENST00000398452 ZKSCAN8Q15776 578 aaPredicted RBP14□□□□□ -0.17
SKA1-202ENST00000398452 ZNF648Q5T619 568 aaPredicted RBP14□□□□□ -0.17
SKA1-202ENST00000398452 HHATQ5VTY9 493 aa14□□□□□ -0.17
SKA1-202ENST00000398452 ZNF549Q6P9A3 640 aa14□□□□□ -0.17
SKA1-202ENST00000398452 KYAT3Q6YP21 454 aaKnown RBP14□□□□□ -0.17
SKA1-202ENST00000398452 ADGRG6Q86SQ4 1221 aa14□□□□□ -0.17
SKA1-202ENST00000398452 LRRTM4Q86VH4 590 aa14□□□□□ -0.17
SKA1-202ENST00000398452 TAX1BP1Q86VP1 789 aa14□□□□□ -0.17
SKA1-202ENST00000398452 MYO1HQ8N1T3 1032 aa14□□□□□ -0.17
SKA1-202ENST00000398452 ZBTB2Q8N680 514 aa14□□□□□ -0.17
SKA1-202ENST00000398452 ANKRD42Q8N9B4 389 aa14□□□□□ -0.17
SKA1-202ENST00000398452 RASGEF1AQ8N9B8 481 aa14□□□□□ -0.17
SKA1-202ENST00000398452 SKA2Q8WVK7 121 aaPredicted RBP14□□□□□ -0.17
SKA1-202ENST00000398452 TMEM159Q96B96 161 aa14□□□□□ -0.17
SKA1-202ENST00000398452 COX14Q96I36 57 aa14□□□□□ -0.17
SKA1-202ENST00000398452 OLFM1Q99784 485 aa14□□□□□ -0.17
SKA1-202ENST00000398452 CCM2Q9BSQ5 444 aa14□□□□□ -0.17
SKA1-202ENST00000398452 MIR1-1HGQ9H1L0 117 aa14□□□□□ -0.17
SKA1-202ENST00000398452 NMRAL1Q9HBL8 299 aa14□□□□□ -0.17
SKA1-202ENST00000398452 OGFRQ9NZT2 677 aa14□□□□□ -0.17
SKA1-202ENST00000398452 KLHL42Q9P2K6 505 aa14□□□□□ -0.17
SKA1-202ENST00000398452 ATXN10Q9UBB4 475 aa14□□□□□ -0.17
SKA1-202ENST00000398452 TMPRSS11EQ9UL52 423 aa14□□□□□ -0.17
SKA1-202ENST00000398452 CNOT6Q9ULM6 557 aaKnown RBP14□□□□□ -0.17
SKA1-202ENST00000398452 GPR34Q9UPC5 381 aa14□□□□□ -0.17
SKA1-202ENST00000398452 TMEM98Q9Y2Y6 226 aa14□□□□□ -0.17
SKA1-202ENST00000398452 PRSS21Q9Y6M0 314 aa14□□□□□ -0.17
SKA1-202ENST00000398452 GPR179Q6PRD1 2367 aa14□□□□□ -0.17
SKA1-202ENST00000398452 ZNF106Q9H2Y7 1883 aaKnown RBP13.99□□□□□ -0.17
SKA1-202ENST00000398452 KLHL33A6NCF5 533 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 IQCF5A8MTL0 148 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 FOXO6A8MYZ6 492 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 TM9SF1O15321 606 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 PRPF4O43172 522 aaKnown RBP eCLIP13.99□□□□□ -0.17
SKA1-202ENST00000398452 IGHV4-34P06331 123 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 LTA4HP09960 611 aaKnown RBP13.99□□□□□ -0.17
SKA1-202ENST00000398452 CCDC166P0CW27 439 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 CBSLP0DN79 551 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 CD27P26842 260 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 CBSP35520 551 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 MAGEA12P43365 314 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 PRLHRP49683 370 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 CDKN2DP55273 166 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 CLDN2P57739 230 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 ATP6V0D1P61421 351 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 B4GALNT1Q00973 533 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 PLOD1Q02809 727 aaPredicted RBP13.99□□□□□ -0.17
SKA1-202ENST00000398452 BOP1Q14137 746 aaKnown RBP13.99□□□□□ -0.17
SKA1-202ENST00000398452 CSHL1Q14406 222 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 ZNF460Q14592 562 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 NFATC4Q14934 902 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 CCDC153Q494R4 210 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 BCL7AQ4VC05 210 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 PPM1JQ5JR12 505 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 ZC3H14Q6PJT7 736 aaKnown RBP13.99□□□□□ -0.17
SKA1-202ENST00000398452 ENPP7Q6UWV6 458 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 CEP68Q76N32 757 aa13.99□□□□□ -0.17
SKA1-202ENST00000398452 DCP2Q8IU60 420 aaKnown RBP13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms