RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 THTPAQ9BU02 230 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 CCDC28BQ9BUN5 200 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 HPS4Q9NQG7 708 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 GNPTGQ9UJJ9 305 aa10.19□□□□□ -0.78
COL6A3-205ENST00000392004 RHPN2P1A8MT19 583 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 PGLSO95336 258 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 CYP2A7P20853 494 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 SLC1A2P43004 574 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 SEPHS1P49903 392 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 TAS2R39P59534 338 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 ZXDBP98169 803 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 SCAPQ12770 1279 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 RASA2Q15283 850 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 TRMT5Q32P41 509 aaKnown RBP10.18□□□□□ -0.78
COL6A3-205ENST00000392004 PACS1Q6VY07 963 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 TMC8Q8IU68 726 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 TRIM42Q8IWZ5 723 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 GPR156Q8NFN8 814 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 MIPOL1Q8TD10 442 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 TRPC4APQ8TEL6 797 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 NRG4Q8WWG1 115 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 HIC2Q96JB3 615 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 LRRC3BQ96PB8 259 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 ELOVL6Q9H5J4 265 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 TAS2R1Q9NYW7 299 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 XPR1Q9UBH6 696 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 INTS6Q9UL03 887 aaKnown RBP10.18□□□□□ -0.78
COL6A3-205ENST00000392004 DYRK1BQ9Y463 629 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 SPO11Q9Y5K1 396 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 WASF2Q9Y6W5 498 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 MYOFQ9NZM1 2061 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 NPEPPSL1A6NEC2 478 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 NEMP2A6NFY4 417 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 OTOL1A6NHN0 477 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-205ENST00000392004 NPIPB15A6NHN6 443 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-205ENST00000392004 CXorf49A8MYA2 514 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-205ENST00000392004 PFDN1O60925 122 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 ADRB3P13945 408 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 ACSL1P33121 698 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 IRF8Q02556 426 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 NAE1Q13564 534 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 SIM2Q14190 667 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-205ENST00000392004 RFTN1Q14699 578 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-205ENST00000392004 PTGR2Q8N8N7 351 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-205ENST00000392004 WDR60Q8WVS4 1066 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 ATOH1Q92858 354 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-205ENST00000392004 MTBPQ96DY7 904 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 MRGPRX2Q96LB1 330 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 CPNE1Q99829 537 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 APOBEC2Q9Y235 224 aaKnown RBP10.18□□□□□ -0.78
COL6A3-205ENST00000392004 RP1P56715 2156 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 CHURC1-FNTBB4DL54 471 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 ALOX15BO15296 676 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 ANPEPP15144 967 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 MPSTP25325 297 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 HOXA9P31269 272 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 GRK3P35626 688 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 GRIA3P42263 894 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 FNTBP49356 437 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 MESP2Q0VG99 397 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 MED21Q13503 144 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 KRT72Q14CN4 511 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 TEAD4Q15561 434 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 ZNF77Q15935 545 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 CNPY1Q3B7I2 92 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 DNAL1Q4LDG9 190 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 UBE2R2Q712K3 238 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-205ENST00000392004 PIWIL4Q7Z3Z4 852 aaKnown RBP10.18□□□□□ -0.78
COL6A3-205ENST00000392004 AMZ2Q86W34 360 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 RALGPS2Q86X27 583 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-205ENST00000392004 COL26A1Q96A83 441 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 NXNL1Q96CM4 212 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 XKR8Q9H6D3 395 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 NMRAL1Q9HBL8 299 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 SSU72Q9NP77 194 aaKnown RBP10.18□□□□□ -0.78
COL6A3-205ENST00000392004 MID1IP1Q9NPA3 183 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 SNX15Q9NRS6 342 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 KLQ9UEF7 1012 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 MAFFQ9ULX9 164 aa10.18□□□□□ -0.78
COL6A3-205ENST00000392004 A0A1B0GVG6 124 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 ANXA6P08133 673 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 DGKAP23743 735 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 METAP1P53582 386 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 GPRC6AQ5T6X5 926 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 HECTD2Q5U5R9 776 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 FAM129CQ86XR2 697 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 LMNTD1Q8N9Z9 388 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 METTL6Q8TCB7 284 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 GATA6Q92908 595 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 GFM2Q969S9 779 aaKnown RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 ECSITQ9BQ95 431 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 MKRN2Q9H000 416 aaKnown RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 EURLQ9NYK6 297 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 NCKIPSDQ9NZQ3 722 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 ARMCX1Q9P291 453 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 PSAT1Q9Y617 370 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 COMMD3-BMI1R4GMX3 469 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 HTTP42858 3142 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 SCN5AQ14524 2016 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 GRXCR2A6NFK2 248 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms