RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 RBM18Q96H35 190 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 SP140LQ9H930 580 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 B3GALT2O43825 422 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 MPSTP25325 297 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 TESCQ96BS2 214 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 GORASP1Q9BQQ3 440 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 AIFM2Q9BRQ8 373 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 RGS17Q9UGC6 210 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 PCDHGB7Q9Y5F8 929 aa12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 RIMS1Q86UR5 1692 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-204ENST00000389857 C8GP07360 202 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 PRDX6P30041 224 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 CYP4F8P98187 520 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 ZNF548Q8NEK5 533 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 KLHL5Q96PQ7 755 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 MCCC2Q9HCC0 563 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 TUSC3Q13454 348 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 TLR1Q15399 786 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 ARMC10Q8N2F6 343 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 HTRA1Q92743 480 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 OR1F1O43749 312 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 RENP00797 406 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 PRH1P02810 166 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 ITIH1P19827 911 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 ARCN1P48444 511 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 RPIAP49247 311 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 CDH13P55290 713 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 HEPACAMQ14CZ8 416 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 ZNF613Q6PF04 617 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 RNF19BQ6ZMZ0 732 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 FEM1CQ96JP0 617 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 CLPTM1LQ96KA5 538 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 WDR18Q9BV38 432 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 TSPAN5P62079 268 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 DNAJB7Q7Z6W7 309 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 RALGPS2Q86X27 583 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 SAMD14Q8IZD0 417 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 UFD1Q92890 307 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 PPM1MQ96MI6 270 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 DHX33Q9H6R0 707 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 BAIAP2Q9UQB8 552 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 CDK14O94921 469 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 EPHX1P07099 455 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 RHOQP17081 205 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 CLCN7P51798 805 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 TAS2R40P59535 323 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 ADAM8P78325 824 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 ZACNQ401N2 412 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 DUS2Q9NX74 493 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 TUBA8Q9NY65 449 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 ROBO3Q96MS0 1386 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 PRR5-ARHGAP8B1AHC4 643 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 FSCN2O14926 492 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 CCNCP24863 283 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 ARHGAP8P85298 464 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 POU5F1Q01860 360 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 NAE1Q13564 534 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 MINDY4Q4G0A6 757 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 TRABD2AQ86V40 505 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 LAPTM4BQ86VI4 370 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 SLC44A1Q8WWI5 657 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 NSMCE3Q96MG7 304 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 ZNF347Q96SE7 839 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 MRIQ9BWK5 157 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 SMPD3Q9NY59 655 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 ZNF639Q9UID6 485 aa12.66□□□□□ -0.38
CCDC88C-204ENST00000389857 MAP2K7O14733 419 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 UGT2B4P06133 528 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 SPATA31D3P0C874 917 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 TAF10Q12962 218 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 CRY2Q49AN0 593 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 ABCA11PQ4W5N1 156 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 SPATA31D4Q6ZUB0 917 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 CMC1Q7Z7K0 106 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 SYVN1Q86TM6 617 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 CNTD1Q8N815 330 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 LRRN4CLQ8ND94 238 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 TPK1Q9H3S4 243 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 HIPK3Q9H422 1215 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 RNF121Q9H920 327 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 ALKBH4Q9NXW9 302 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 A0A075B6Q4 140 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 NME6O75414 186 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 SCELO95171 688 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 NR4A1P22736 598 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 ACVR2AP27037 513 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 LDLRAP1Q5SW96 308 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 SH3RF1Q7Z6J0 888 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 PGAM4Q8N0Y7 254 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 CRYBG2Q8N1P7 616 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 SLC22A17Q8WUG5 538 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 DCAKDQ8WVC6 231 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 PLD4Q96BZ4 506 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 KCTD15Q96SI1 283 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 SLC38A3Q99624 504 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 ALG2Q9H553 416 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 ACP6Q9NPH0 428 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 FARSBQ9NSD9 589 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 CDH22Q9UJ99 828 aa12.65□□□□□ -0.38
CCDC88C-204ENST00000389857 FBXW2Q9UKT8 454 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms