RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 ACOX1Q15067 660 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 RAB41Q5JT25 222 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 LARGE2Q8N3Y3 721 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 TRUB1Q8WWH5 349 aaKnown RBP8.66□□□□□ -1.02
LIG3-202ENST00000378526 DEDD2Q8WXF8 326 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 RIT1Q92963 219 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 MASTLQ96GX5 879 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 ADAM2Q99965 735 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 NINJ2Q9NZG7 142 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 ZNF282Q9UDV7 671 aaPredicted RBP8.66□□□□□ -1.02
LIG3-202ENST00000378526 IFT52Q9Y366 437 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 EDC4Q6P2E9 1401 aaKnown RBP8.66□□□□□ -1.02
LIG3-202ENST00000378526 ABHD14A-ACY1A0A1B0GW23 586 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 ELOVL7A1L3X0 281 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 SCGB2A1O75556 95 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 RFPL2O75678 378 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 TDP2O95551 362 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 CDK1P06493 297 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 ITPKAP23677 461 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 SEC23AQ15436 765 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 ZNF311Q5JNZ3 666 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 TMEM31Q5JXX7 168 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 NCEH1Q6PIU2 408 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 SH3RF1Q7Z6J0 888 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 GTPBP8Q8N3Z3 284 aaPredicted RBP8.66□□□□□ -1.02
LIG3-202ENST00000378526 VRK1Q99986 396 aaPredicted RBP8.66□□□□□ -1.02
LIG3-202ENST00000378526 NFKBIZQ9BYH8 718 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 POLR2J2Q9GZM3 115 aaKnown RBP8.66□□□□□ -1.02
LIG3-202ENST00000378526 ARL6Q9H0F7 186 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 FN3KQ9H479 309 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 PIDD1Q9HB75 910 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 URADA6NGE7 173 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 KBTBD13C9JR72 458 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 XPNPEP2O43895 674 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 SAGP10523 405 aaPredicted RBP8.66□□□□□ -1.02
LIG3-202ENST00000378526 PRKCIP41743 596 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 DSTNP60981 165 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 NAE1Q13564 534 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 NIPAL3Q6P499 406 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 NRROSQ86YC3 692 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 CPNE9Q8IYJ1 553 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 SAMD14Q8IZD0 417 aaPredicted RBP8.66□□□□□ -1.02
LIG3-202ENST00000378526 FAM83DQ9H4H8 585 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 HEBP1Q9NRV9 189 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 KBTBD4Q9NVX7 518 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 ZNF226Q9NYT6 803 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 SLC27A6Q9Y2P4 619 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 TNFRSF11BO00300 401 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 RHOP08100 348 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 PSEN1P49768 467 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 CREMQ03060 361 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 MTM1Q13496 603 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 PFKFB4Q16877 469 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 TIGD2Q4W5G0 525 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 GPR180Q86V85 440 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.66□□□□□ -1.02
LIG3-202ENST00000378526 SMURF1Q9HCE7 757 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 IKZF2Q9UKS7 526 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 NT5C1B-RDH14C9J2C7 533 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 PLEKP08567 350 aaPredicted RBP8.66□□□□□ -1.02
LIG3-202ENST00000378526 PEX2P28328 305 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 EN1Q05925 392 aaPredicted RBP8.66□□□□□ -1.02
LIG3-202ENST00000378526 BMPR2Q13873 1038 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 FASTKD3Q14CZ7 662 aaKnown RBP8.66□□□□□ -1.02
LIG3-202ENST00000378526 PEA15Q15121 130 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 CRY1Q16526 586 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 GOLGA7BQ2TAP0 167 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 SCGB2B2Q4G0G5 96 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 SLC30A10Q6XR72 485 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 DNAJB8Q8NHS0 232 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 SLC38A4Q969I6 547 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 TMEM209Q96SK2 561 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 ABCG4Q9H172 646 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 SENP2Q9HC62 589 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 SEC14L3Q9UDX4 400 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 CAPN6Q9Y6Q1 641 aa8.66□□□□□ -1.02
LIG3-202ENST00000378526 ARPC2O15144 300 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 CYP11A1P05108 521 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 UROSP10746 265 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 CUL2Q13617 745 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 PDIA6Q15084 440 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 ATXN7L2Q5T6C5 722 aaPredicted RBP8.65□□□□□ -1.02
LIG3-202ENST00000378526 C1orf186Q6ZWK4 172 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 ZDHHC17Q8IUH5 632 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 ZNF565Q8N9K5 539 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 GLTPQ9NZD2 209 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 ATG4BQ9Y4P1 393 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 ATP7BP35670 1465 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 PRKXP51817 358 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 SLC9B2Q86UD5 537 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 ANKRD13BQ86YJ7 626 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 PIGXQ8TBF5 258 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 C17orf75Q9HAS0 396 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 ARL15Q9NXU5 204 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 MOCS1Q9NZB8 636 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 AGAP14A8MT82 685 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 ATMINO43313 823 aaPredicted RBP8.65□□□□□ -1.02
LIG3-202ENST00000378526 FBXO21O94952 628 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 MAOAP21397 527 aa8.65□□□□□ -1.02
LIG3-202ENST00000378526 NUDT1P36639 197 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms