RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 TOR3AQ9H497 397 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 INTS7Q9NVH2 962 aaKnown RBP13.74□□□□□ -0.21
COL6A1-201ENST00000361866 INTS10Q9NVR2 710 aaKnown RBP13.74□□□□□ -0.21
COL6A1-201ENST00000361866 TOR4AQ9NXH8 423 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 KCNH4Q9UQ05 1017 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 RAI2Q9Y5P3 530 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 ALS2Q96Q42 1657 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 MYO10Q9HD67 2058 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 TCRBV5S1A1TA0A578 114 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 SH3PXD2BA1X283 911 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 PPP6CO00743 305 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 AIREO43918 545 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 XYLBO75191 536 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 KCNA5P22460 613 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 GRIA2P42262 883 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 DGKEP52429 567 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 ERVK-8P63133 956 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 COLEC12Q5KU26 742 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 CYP20A1Q6UW02 462 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 CASP12Q6UXS9 341 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 CMTR2Q8IYT2 770 aaKnown RBP13.74□□□□□ -0.21
COL6A1-201ENST00000361866 CDKN2AIPNLQ96HQ2 116 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 MTRRQ9UBK8 725 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 PCDHGA7Q9Y5G6 932 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 NUMA1Q14980 2115 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 A0A1B0GTW7 788 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 ARL5CA6NH57 179 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 CENPXA8MT69 81 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 NME4O00746 187 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 DCLK1O15075 740 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 TMCC2O75069 709 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 G6PDP11413 515 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 KRT20P35900 424 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 RFX3P48380 749 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 ARSFP54793 590 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 ZNF678Q5SXM1 525 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 CILP2Q8IUL8 1156 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 TOP1MTQ969P6 601 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 AURKBQ96GD4 344 aaPredicted RBP13.74□□□□□ -0.21
COL6A1-201ENST00000361866 EBPLQ9BY08 206 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 CCM2LQ9NUG4 571 aaPredicted RBP13.74□□□□□ -0.21
COL6A1-201ENST00000361866 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.74□□□□□ -0.21
COL6A1-201ENST00000361866 MTMR10Q9NXD2 777 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 RPS6KA6Q9UK32 745 aa13.74□□□□□ -0.21
COL6A1-201ENST00000361866 CNTN5O94779 1100 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 ACVRL1P37023 503 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 SPIBQ01892 262 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 NPTX1Q15818 432 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 HIST2H2ACQ16777 129 aaPredicted RBP13.73□□□□□ -0.21
COL6A1-201ENST00000361866 TECRLQ5HYJ1 363 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 HIST2H2AA3Q6FI13 130 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 PPP4R4Q6NUP7 873 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 CAMKK1Q8N5S9 505 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 BRSK1Q8TDC3 778 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 ANKRD49Q8WVL7 239 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 PYCR2Q96C36 320 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 BTN2A3PQ96KV6 586 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 DMRTB1Q96MA1 342 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 MARCH4Q9P2E8 410 aaPredicted RBP13.73□□□□□ -0.21
COL6A1-201ENST00000361866 RIMS3Q9UJD0 308 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 DOT1LQ8TEK3 1739 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 TRPM3Q9HCF6 1732 aaPredicted RBP13.73□□□□□ -0.21
COL6A1-201ENST00000361866 ZNF99A8MXY4 864 aaPredicted RBP13.73□□□□□ -0.21
COL6A1-201ENST00000361866 FAM25AB3EWG3 89 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 FAM25CB3EWG5 89 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 FAM25GB3EWG6 89 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 ARVCFO00192 962 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 TULP3O75386 442 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 CLPXO76031 633 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 CD68P34810 354 aaPredicted RBP13.73□□□□□ -0.21
COL6A1-201ENST00000361866 CTSKP43235 329 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 VBP1P61758 197 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 PDCD4Q53EL6 469 aaKnown RBP13.73□□□□□ -0.21
COL6A1-201ENST00000361866 TRIQKQ629K1 86 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 ZNF57Q68EA5 555 aaPredicted RBP13.73□□□□□ -0.21
COL6A1-201ENST00000361866 NANOGP8Q6NSW7 305 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 PRR23BQ6ZRT6 265 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 PHACTR4Q8IZ21 702 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 TTC29Q8NA56 475 aaPredicted RBP13.73□□□□□ -0.21
COL6A1-201ENST00000361866 GAB3Q8WWW8 586 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 CENPIQ92674 756 aaPredicted RBP13.73□□□□□ -0.21
COL6A1-201ENST00000361866 OMA1Q96E52 524 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 VRTNQ9H8Y1 702 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 NANOGQ9H9S0 305 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 CAPN10Q9HC96 672 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 SNX6Q9UNH7 406 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 PLCH1Q4KWH8 1693 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 URB1O60287 2271 aaKnown RBP13.73□□□□□ -0.21
COL6A1-201ENST00000361866 MYO9BQ13459 2157 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 PIPSLA2A3N6 862 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 IFRD1O00458 451 aaPredicted RBP13.73□□□□□ -0.21
COL6A1-201ENST00000361866 KPNA5O15131 536 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 ALOX5P09917 674 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 RPL9P32969 192 aaKnown RBP13.73□□□□□ -0.21
COL6A1-201ENST00000361866 KIR3DL1P43629 444 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 ARSDP51689 593 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 COPZ1P61923 177 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 PLD1Q13393 1074 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 GTF2H2Q13888 395 aa13.73□□□□□ -0.21
COL6A1-201ENST00000361866 MOGQ16653 247 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms