RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 CDHR3Q6ZTQ4 885 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 NIPA1Q7RTP0 329 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 PIM3Q86V86 326 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 ZDHHC21Q8IVQ6 265 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 NELL1Q92832 810 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 COPS8Q99627 209 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 DUSP16Q9BY84 665 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 TTYH1Q9H313 450 aaPredicted RBP8.6□□□□□ -1.03
RTN3-202ENST00000339997 BRD9Q9H8M2 597 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 COMMD9Q9P000 198 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 EVLQ9UI08 416 aaPredicted RBP8.6□□□□□ -1.03
RTN3-202ENST00000339997 GNPTGQ9UJJ9 305 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 RGPD5Q99666 1765 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 DNAH12Q6ZR08 3092 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SMIM28A0A1B0GU29 152 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 ABHD14A-ACY1A0A1B0GW23 586 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SCN2BO60939 215 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 PRKD3O94806 890 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 KDM4BO94953 1096 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 TBX18O95935 607 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 PKMP14618 531 aaKnown RBP8.6□□□□□ -1.03
RTN3-202ENST00000339997 GTF2E2P29084 291 aaKnown RBP8.6□□□□□ -1.03
RTN3-202ENST00000339997 SLC1A2P43004 574 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 CCL23P55773 120 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 PTPRCAPQ14761 206 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SMU1Q2TAY7 513 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 CCNYL2Q5T2Q4 361 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 CPTPQ5TA50 214 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SMYD5Q6GMV2 418 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 GALNTL5Q7Z4T8 443 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SLC22A16Q86VW1 577 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 ZMIZ2Q8NF64 920 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 ZNF384Q8TF68 577 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 DCAKDQ8WVC6 231 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 PSMG2Q969U7 264 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 EXOSC8Q96B26 276 aaKnown RBP8.6□□□□□ -1.03
RTN3-202ENST00000339997 REPS1Q96D71 796 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 ITCHQ96J02 903 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 KCNA7Q96RP8 456 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SLITRK2Q9H156 845 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 TRIT1Q9H3H1 467 aaKnown RBP8.6□□□□□ -1.03
RTN3-202ENST00000339997 PNPLA8Q9NP80 782 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 GALPQ9UBC7 116 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SEC14L3Q9UDX4 400 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 STOML2Q9UJZ1 356 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 ST3GAL5Q9UNP4 418 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 KCNE2Q9Y6J6 123 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 KDM3BQ7LBC6 1761 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 UBE2QL1A1L167 161 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 TBC1D3BA6NDS4 549 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 EFCAB9A8MZ26 197 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 FPGTO14772 594 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 AP2A1O95782 977 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 UNGP13051 313 aaPredicted RBP8.6□□□□□ -1.03
RTN3-202ENST00000339997 PSEN2P49810 448 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 TAF10Q12962 218 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 CYP2A13Q16696 494 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 MEP1AQ16819 746 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 UGT8Q16880 541 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 ARHGAP15Q53QZ3 475 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 METTL21CQ5VZV1 264 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SYCE2Q6PIF2 218 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.6□□□□□ -1.03
RTN3-202ENST00000339997 LIX1Q8N485 282 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 KCT2Q8NC54 265 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 OR13C4Q8NGS5 318 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SCAMP5Q8TAC9 235 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SMG7Q92540 1137 aaKnown RBP8.6□□□□□ -1.03
RTN3-202ENST00000339997 SHISA4Q96DD7 197 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 TVP23BQ9NYZ1 205 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SLC2A6Q9UGQ3 507 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SYNPO2Q9UMS6 1093 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SF3B1O75533 1304 aaKnown RBP eCLIP8.6□□□□□ -1.036e-9■■■■■ 64.2
RTN3-202ENST00000339997 SH3D21A4FU49 640 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 ARHGEF33A8MVX0 844 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SAGP10523 405 aaPredicted RBP8.6□□□□□ -1.03
RTN3-202ENST00000339997 PTPN3P26045 913 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 KLRC2P26717 231 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 TKTP29401 623 aaKnown RBP8.6□□□□□ -1.03
RTN3-202ENST00000339997 EPHX2P34913 555 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 GDF5P43026 501 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 VBP1P61758 197 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 BTG3Q14201 252 aaPredicted RBP8.6□□□□□ -1.03
RTN3-202ENST00000339997 CYP27C1Q4G0S4 372 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 PIK3R6Q5UE93 754 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 ALKBH2Q6NS38 261 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 CHADLQ6NUI6 762 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 MZT2AQ6P582 158 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 AFTPHQ6ULP2 937 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 LCLAT1Q6UWP7 414 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 ZYG11AQ6WRX3 759 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 USP30Q70CQ3 517 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 STX12Q86Y82 276 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 PIAS4Q8N2W9 510 aaPredicted RBP8.6□□□□□ -1.03
RTN3-202ENST00000339997 CNTD1Q8N815 330 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 OR52L1Q8NGH7 329 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 CD101Q93033 1021 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 PPCDCQ96CD2 204 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SLC38A2Q96QD8 506 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 OR51V1Q9H2C8 321 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms