RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 COL13A1Q5TAT6 717 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ZNF772Q68DY9 489 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 TAS1R3Q7RTX0 852 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 RNF130Q86XS8 419 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 UBASH3BQ8TF42 649 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 TFB1MQ8WVM0 346 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ALG3Q92685 438 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ZNF566Q969W8 418 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 S100PBPQ96BU1 408 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 GPRASP2Q96D09 838 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ZNF512Q96ME7 567 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CRAMP1Q96RY5 1269 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 PFDN5Q99471 154 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 NPAS1Q99742 590 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 GDE1Q9NZC3 331 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 UXTQ9UBK9 157 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CTSFQ9UBX1 484 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 SEC14L4Q9UDX3 406 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ALG5Q9Y673 324 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 FRMPD2Q68DX3 1309 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 MYOCOSA0A1B0GUC4 107 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 A0A1W2PPM1 405 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 METTL15A6NJ78 407 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 M0R233 179 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 OPN1LWP04000 364 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ARP10275 920 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 MAPK4P31152 587 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ATP4BP51164 291 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 JAM2P57087 298 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 BTG1P62324 171 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ADARB1P78563 741 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 KCNAB2Q13303 367 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 DYRK1AQ13627 763 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 MFSD10Q14728 455 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 AP5B1Q2VPB7 878 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 TMEM95Q3KNT9 176 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 FAM160B1Q5W0V3 765 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 TMEM132EQ6IEE7 984 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 EFCAB12Q6NXP0 572 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 HAGHLQ6PII5 290 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ZNF574Q6ZN55 896 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 RNF111Q6ZNA4 994 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 EID3Q8N140 333 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CARFQ8N187 725 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 OR5T1Q8NG75 326 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 OR6M1Q8NGM8 313 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ITFG1Q8TB96 612 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 DDX1Q92499 740 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 SHARPINQ9H0F6 387 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 TMPRSS5Q9H3S3 457 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 UNKLQ9H9P5 680 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 SDHAF2Q9NX18 166 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 OSGIN1Q9UJX0 560 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 QRICH2Q9H0J4 1663 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 DHRS12A0PJE2 317 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 TARM1B6A8C7 271 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 KBTBD13C9JR72 458 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 G3V2T6 193 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 PIK3R2O00459 728 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 MYL12BO14950 172 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CLDN3O15551 220 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 OPN1MWP04001 364 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ADRB1P08588 477 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 OPN1MW2P0DN77 364 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 OPN1MW3P0DN78 364 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 MYL12AP19105 171 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 GPC1P35052 558 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 KCNC1P48547 511 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 HNRNPKP61978 463 aaKnown RBP eCLIP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CCNA1P78396 465 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CBX2Q14781 532 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 TAF1CQ15572 869 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CARTPTQ16568 116 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 PPP1R3AQ16821 1122 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 SYT6Q5T7P8 510 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 TRIQKQ629K1 86 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 LIN54Q6MZP7 749 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 GDPGP1Q6ZNW5 385 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CATSPERGQ6ZRH7 1159 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 LILRA2Q8N149 483 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 FBXO36Q8NEA4 188 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 C19orf18Q8NEA5 215 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 FAM46DQ8NEK8 389 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 NANPQ8TBE9 248 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ST7LQ8TDW4 575 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 NSUN6Q8TEA1 469 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CRELD1Q96HD1 420 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ZNF518BQ9C0D4 1074 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 PRDM9Q9NQV7 894 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 PDGFCQ9NRA1 345 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 LINC00587B1AMM8 73 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 KHNYNO15037 678 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 AIREO43918 545 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CELF2O95319 508 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 RAF1P04049 648 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 OGNP20774 298 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 POU3F4P49335 361 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 RPL14P50914 215 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 RAB5CP51148 216 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms