RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 RTP4Q96DX8 246 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 SLC39A8Q9C0K1 460 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 XYLT2Q9H1B5 865 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 DCSTAMPQ9H295 470 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 ANKHQ9HCJ1 492 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 PRDM5Q9NQX1 630 aaPredicted RBP19.1■□□□□ 0.65
USP48-201ENST00000308271 BTBD19C9JJ37 291 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 GTF2H2Q13888 395 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 GTF2H2CQ6P1K8 395 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 BORAQ6PGQ7 559 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 ARMCX6Q7L4S7 300 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 SLC22A16Q86VW1 577 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 CDK20Q8IZL9 346 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 RASSF5Q8WWW0 418 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 TEFMQ96QE5 360 aaKnown RBP19.1■□□□□ 0.65
USP48-201ENST00000308271 C2orf49Q9BVC5 232 aaPredicted RBP19.1■□□□□ 0.65
USP48-201ENST00000308271 RPF2Q9H7B2 306 aaKnown RBP19.1■□□□□ 0.65
USP48-201ENST00000308271 DNAJB5O75953 348 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 TSPAN9O75954 239 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 CLTBP09497 229 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 PRPS2P11908 318 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 NDST2P52849 883 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 ARSFP54793 590 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 NIPAL4Q0D2K0 466 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 MFSD1Q9H3U5 465 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 EHD1Q9H4M9 534 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 GIT1Q9Y2X7 761 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 SMIM35A0A1B0GVV1 85 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 H0Y858 1186 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 FMO3P31513 532 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 TUBA1BP68363 451 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 JAG1P78504 1218 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 TRIM71Q2Q1W2 868 aaKnown RBP19.1■□□□□ 0.65
USP48-201ENST00000308271 TUBA1AQ71U36 451 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 C16orf59Q7L2K0 433 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 R3HCC1LQ7Z5L2 792 aaKnown RBP19.1■□□□□ 0.65
USP48-201ENST00000308271 HDAC2Q92769 488 aaKnown RBP19.1■□□□□ 0.65
USP48-201ENST00000308271 SNX7Q9UNH6 387 aa19.1■□□□□ 0.65
USP48-201ENST00000308271 FEN1P39748 380 aaKnown RBP19.09■□□□□ 0.65
USP48-201ENST00000308271 ANGPT1Q15389 498 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 COLEC12Q5KU26 742 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 USP45Q70EL2 814 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 TXNDC5Q8NBS9 432 aaKnown RBP19.09■□□□□ 0.65
USP48-201ENST00000308271 SLC38A2Q96QD8 506 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 H0YC42 278 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 MPZL2O60487 215 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 HLCSP50747 726 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 CLDN10P78369 228 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 FAM92BQ6ZTR7 304 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 FIBCD1Q8N539 461 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 DIRAS2Q96HU8 199 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 ABCG8Q9H221 673 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 RASAL1O95294 804 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 COL6A1P12109 1028 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 HSPA7P48741 367 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 OR2B6P58173 313 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 OLIG2Q13516 323 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 XKR6Q5GH73 641 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 CPTPQ5TA50 214 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 BTN2A2Q8WVV5 523 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 PCED1BQ96HM7 432 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 SMPD4Q9NXE4 827 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 DNMT3LQ9UJW3 386 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 PCDHB9Q9Y5E1 797 aa19.09■□□□□ 0.65
USP48-201ENST00000308271 CICQ96RK0 1608 aaPredicted RBP19.08■□□□□ 0.65
USP48-201ENST00000308271 LOC100130705A0A1B0GUX0 176 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 IRF6O14896 467 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 HOXA2O43364 376 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 CAPN15O75808 1086 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 C22orf31O95567 290 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 NPPAP01160 153 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 RABL3Q5HYI8 236 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 CHADLQ6NUI6 762 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 LIX1Q8N485 282 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 TINF2Q9BSI4 451 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 K7EPI3 171 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 FPGTO14772 594 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 ALDH1A2O94788 518 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 CLDN9O95484 217 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 AQP1P29972 269 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 ACLYP53396 1101 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 SDE2Q6IQ49 451 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 CYP20A1Q6UW02 462 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 KLRG1Q96E93 195 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 EBF1Q9UH73 591 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 CFL2Q9Y281 166 aa19.08■□□□□ 0.65
USP48-201ENST00000308271 PDHXO00330 501 aa19.08■□□□□ 0.64
USP48-201ENST00000308271 DHFRP00374 187 aa19.08■□□□□ 0.64
USP48-201ENST00000308271 GALNT2Q10471 571 aa19.08■□□□□ 0.64
USP48-201ENST00000308271 RBM20Q5T481 1227 aaKnown RBP19.08■□□□□ 0.64
USP48-201ENST00000308271 HACD2Q6Y1H2 254 aa19.08■□□□□ 0.64
USP48-201ENST00000308271 CSGALNACT1Q8TDX6 532 aa19.08■□□□□ 0.64
USP48-201ENST00000308271 UBE2E3Q969T4 207 aa19.08■□□□□ 0.64
USP48-201ENST00000308271 FBRSL1Q9HCM7 1045 aaKnown RBP19.08■□□□□ 0.64
USP48-201ENST00000308271 LAMB4A4D0S4 1761 aa19.08■□□□□ 0.64
USP48-201ENST00000308271 KERAO60938 352 aa19.08■□□□□ 0.64
USP48-201ENST00000308271 CDK4P11802 303 aa19.08■□□□□ 0.64
USP48-201ENST00000308271 IL7RP16871 459 aa19.08■□□□□ 0.64
USP48-201ENST00000308271 POLR2EP19388 210 aaKnown RBP19.08■□□□□ 0.64
USP48-201ENST00000308271 PTX3P26022 381 aaPredicted RBP19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms