RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 TOR1AO14656 332 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ERCC1P07992 297 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 LSAMPQ13449 338 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 GUK1Q16774 197 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 PIGGQ5H8A4 983 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 CD163Q86VB7 1156 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 PSTKQ8IV42 348 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 SLC47A1Q96FL8 570 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF696Q9H7X3 374 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 GNG8Q9UK08 70 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 KITLGP21583 273 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 PAX6P26367 422 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 MAPK10P53779 464 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF211Q13398 564 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 FGD3Q5JSP0 725 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 SLFN13Q68D06 897 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 MAEAQ7L5Y9 396 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 TMPRSS11BQ86T26 416 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 PDSS2Q86YH6 399 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 TPD52L3Q96J77 140 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 PUS3Q9BZE2 481 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 PKIBQ9C010 78 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 DOCK5Q9H7D0 1870 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 URADA6NGE7 173 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 CBY3A6NI87 242 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 M0QYV0 167 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 SLC28A1O00337 649 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 KLF11O14901 512 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 DGKIO75912 1065 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 RGS9O75916 674 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 DIRAS1O95057 198 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 CBX6O95503 412 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 DDX6P26196 483 aaKnown RBP eCLIP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 TIMM10P62072 90 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF311Q5JNZ3 666 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ILDR2Q71H61 639 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 NUP54Q7Z3B4 507 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ZC3H7AQ8IWR0 971 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 MRPS31Q92665 395 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 UPF1Q92900 1129 aaKnown RBP eCLIP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 FAXDC2Q96IV6 333 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 SIAEQ9HAT2 523 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 C12orf10Q9HB07 376 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 SPANXA1Q9NS26 97 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ARMCX1Q9P291 453 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 PCDHGA8Q9Y5G5 932 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF335Q9H4Z2 1342 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ECM29Q5VYK3 1845 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 UBA1P22314 1058 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 KLRC1P26715 233 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 RTL4Q6ZR62 310 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 FOXP4Q8IVH2 680 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 TOMM5Q8N4H5 51 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 LILRB4Q8NHJ6 448 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 PSKH2Q96QS6 385 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 AGAP2Q99490 1192 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 KCTD10Q9H3F6 313 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 WASF2Q9Y6W5 498 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 DENND4BO75064 1496 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 LCMT2O60294 686 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 PROSCO94903 275 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 HLA-DPB1P04440 258 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 NTSP30990 170 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 METTL11BQ5VVY1 283 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 MEDAGQ5VYS4 303 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 CCDC54Q8NEL0 328 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 SLITRK1Q96PX8 696 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 TREM1Q9NP99 234 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 OPTCQ9UBM4 332 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 NEURL4Q96JN8 1562 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 A0A096LPK6 155 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 NIPAL4Q0D2K0 466 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 CARNMT1Q8N4J0 409 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 FAM71DQ8N9W8 422 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 LFNGQ8NES3 379 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 MYO19Q96H55 970 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 OR2M2Q96R28 347 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 PNMA8BQ9ULN7 279 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 KBTBD13C9JR72 458 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SLC16A8O95907 504 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SRCP12931 536 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 IL1R1P14778 569 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF37AP17032 561 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 TSPAN5P62079 268 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 IFI35P80217 286 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 FSTL1Q12841 308 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 MTAPQ13126 283 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 MTF1Q14872 753 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 CRY1Q16526 586 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 AKIRIN2Q53H80 203 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 BTBD8Q5XKL5 378 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 BEND5Q7L4P6 421 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 OR2L2Q8NH16 312 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 NSUN6Q8TEA1 469 aaKnown RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 FRS2Q8WU20 508 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SNAPC3Q92966 411 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 EAF2Q96CJ1 260 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 MOB1AQ9H8S9 216 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 LRRC14BA6NHZ5 514 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 TNFRSF10AO00220 468 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms