RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 ZNF709Q8N972 641 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 OR5T2Q8NGG2 359 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 PRMT6Q96LA8 375 aaPredicted RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 USB1Q9BQ65 265 aaKnown RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 REM1O75628 298 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 TRUB2O95900 331 aaKnown RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 ITGA5P08648 1049 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 GNSP15586 552 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 VARSP26640 1264 aaKnown RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 RPL6Q02878 288 aaKnown RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 CXCL17Q6UXB2 119 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 TBX5Q99593 518 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 RBM4BQ9BQ04 359 aaKnown RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 RBM4Q9BWF3 364 aaKnown RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 TMEM121BQ9BXQ6 578 aaPredicted RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 SLC5A7Q9GZV3 580 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 CAMSAP1Q5T5Y3 1602 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 SCN1BQ07699 218 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 PRAMEF19Q5SWL8 479 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 SPAG16Q8N0X2 631 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 NINJ1Q92982 152 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 LGMNQ99538 433 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 COPS8Q99627 209 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 C14orf166Q9Y224 244 aaKnown RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 CLTCQ00610 1675 aaKnown RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 TRAFD1O14545 582 aaPredicted RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 B3GALT2O43825 422 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 IPO13O94829 963 aaKnown RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 YAP1P46937 504 aaKnown RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 CDH13P55290 713 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 ALYREFQ86V81 257 aaKnown RBP11.28□□□□□ -0.6
PTPN4-201ENST00000263708 CAVIN3Q969G5 261 aa11.28□□□□□ -0.6
PTPN4-201ENST00000263708 E7EQ34 232 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 CLDN5O00501 218 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 RARAP10276 462 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 DCKP27707 260 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 SMAD3P84022 425 aaKnown RBP11.27□□□□□ -0.6
PTPN4-201ENST00000263708 DHDDSQ86SQ9 333 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 CAND1Q86VP6 1230 aaKnown RBP11.27□□□□□ -0.6
PTPN4-201ENST00000263708 CFAP97Q9P2B7 532 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 CD44P16070 742 aaKnown RBP11.27□□□□□ -0.6
PTPN4-201ENST00000263708 CD40LGP29965 261 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 ADAM17P78536 824 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 ZDHHC20Q5W0Z9 365 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 IQCHQ86VS3 1027 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 GMCL1P1Q8NEA9 526 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 LCN9Q8WX39 176 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 A0A0J9YVX5 310 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 H0YGN5 161 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 PRLP01236 227 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 MSX2P35548 267 aaPredicted RBP11.27□□□□□ -0.6
PTPN4-201ENST00000263708 SCNN1AP37088 669 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 EIF1AXP47813 144 aaKnown RBP11.27□□□□□ -0.6
PTPN4-201ENST00000263708 PER3P56645 1201 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 HID1Q8IV36 788 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 ZBTB45Q96K62 511 aaPredicted RBP11.27□□□□□ -0.6
PTPN4-201ENST00000263708 KLHL15Q96M94 604 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 TSSK3Q96PN8 268 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 ABCD2Q9UBJ2 740 aa11.27□□□□□ -0.6
PTPN4-201ENST00000263708 CSTBP04080 98 aaKnown RBP11.27□□□□□ -0.61
PTPN4-201ENST00000263708 ANTXR2P58335 489 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 LRRC20Q8TCA0 184 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 DMRTB1Q96MA1 342 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 MRPL45Q9BRJ2 306 aaKnown RBP11.27□□□□□ -0.61
PTPN4-201ENST00000263708 FAM105AQ9NUU6 356 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 KCNS2Q9ULS6 477 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 NME6O75414 186 aaPredicted RBP11.27□□□□□ -0.61
PTPN4-201ENST00000263708 PPM1BO75688 479 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 STBD1O95210 358 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 POU2F1P14859 743 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 IDSP22304 550 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 MLLT3P42568 568 aaPredicted RBP11.27□□□□□ -0.61
PTPN4-201ENST00000263708 GRM3Q14832 879 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 ARSKQ6UWY0 536 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 SLC7A6OSQ96CW6 309 aaPredicted RBP11.27□□□□□ -0.61
PTPN4-201ENST00000263708 B3GAT2Q9NPZ5 323 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 CARD8Q9Y2G2 431 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 MAGI2Q86UL8 1455 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 PLEKHG4Q58EX7 1191 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 GRHL3Q8TE85 626 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 PPM1MQ96MI6 270 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 ASB7Q9H672 318 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 VNN3Q9NY84 501 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 FGF19O95750 216 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 IL7RP16871 459 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 APLP1P51693 650 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 SMARCB1Q12824 385 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 PROKR2Q8NFJ6 384 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 APOLD1Q96LR9 279 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 FTHL17Q9BXU8 183 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 NXF3Q9H4D5 531 aaKnown RBP11.27□□□□□ -0.61
PTPN4-201ENST00000263708 SEC61A2Q9H9S3 476 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 SMURF2Q9HAU4 748 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 SPATA7Q9P0W8 599 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 PNPLA6Q8IY17 1366 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.27□□□□□ -0.61
PTPN4-201ENST00000263708 GOT1P17174 413 aa11.27□□□□□ -0.61
PTPN4-201ENST00000263708 POLR2JP52435 117 aaKnown RBP11.27□□□□□ -0.61
PTPN4-201ENST00000263708 MLLT6P55198 1093 aaPredicted RBP11.27□□□□□ -0.61
PTPN4-201ENST00000263708 ZNF844Q08AG5 666 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms