RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PRKD2Q9BZL6 878 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 HPS4Q9NQG7 708 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 ZNHIT2Q9UHR6 403 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 ZNF510Q9Y2H8 683 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 GIT1Q9Y2X7 761 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 IGLV3-10A0A075B6K4 115 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 TRIM64A6NGJ6 449 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 H3BNC9 293 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 CBX4O00257 560 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 ANKRD28O15084 1053 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 ATF6P18850 670 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 NFKB2Q00653 900 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 IFITM3Q01628 133 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 TRAF2Q12933 501 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 DSC3Q14574 896 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 SPCS2Q15005 226 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 GLYATQ6IB77 296 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 TIGD7Q6NT04 549 aaPredicted RBP10.56□□□□□ -0.72
USP28-201ENST00000003302 KIAA1191Q96A73 305 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 ZNF583Q96ND8 569 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 SLC22A12Q96S37 553 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 SLC8A2Q9UPR5 921 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 TRIM64CA6NLI5 447 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 RPP40O75818 363 aaKnown RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 IRF1P10914 325 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 RHOQP17081 205 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 HSPA7P48741 367 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 SUOXP51687 545 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 POLR2JP52435 117 aaKnown RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 FOXD4Q12950 439 aaPredicted RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 CYP2A13Q16696 494 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 GLT6D1Q7Z4J2 308 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 R3HCC1LQ7Z5L2 792 aaKnown RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 TMCO2Q7Z6W1 182 aaPredicted RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 STK32CQ86UX6 486 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 LMNTD1Q8N9Z9 388 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 GIPC3Q8TF64 312 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 PTCD2Q8WV60 388 aaKnown RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 FIG4Q92562 907 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 GFM2Q969S9 779 aaKnown RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 ZNF599Q96NL3 588 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 UPF3AQ9H1J1 476 aaKnown RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 SMPD4Q9NXE4 827 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 CCDC154A6NI56 674 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 UNCXA6NJT0 531 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 K7EPI3 171 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 KERAO60938 352 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 HNRNPCP07910 306 aaKnown RBP eCLIP10.55□□□□□ -0.72
USP28-201ENST00000003302 IDUAP35475 653 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 ADARB1P78563 741 aaKnown RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 ZNF33AQ06730 810 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 GALNT1Q10472 559 aaPredicted RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 KCNA10Q16322 511 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 SUSD1Q6UWL2 747 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 DENND1CQ8IV53 801 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 SLC22A9Q8IVM8 553 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 CLEC4FQ8N1N0 589 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 TMEM199Q8N511 208 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 OR4F6Q8NGB9 312 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 CNIH3Q8TBE1 160 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 FBXO32Q969P5 355 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 SERPINB11Q96P15 392 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 TM6SF2Q9BZW4 377 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 ATP6V1G1O75348 118 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 SH3BGRLO75368 114 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 SLC22A3O75751 556 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 BMP10O95393 424 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 CYP4B1P13584 511 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 EEF1B2P24534 225 aaKnown RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 NFKBIAP25963 317 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 MC4RP32245 332 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 TSPY1Q01534 308 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 TAF1CQ15572 869 aaPredicted RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 INTS11Q5TA45 600 aaKnown RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 IL27RAQ6UWB1 636 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 USP51Q70EK9 711 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 MRPL10Q7Z7H8 261 aaKnown RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 CAMK1DQ8IU85 385 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 RIMKLAQ8IXN7 391 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 ADGRG2Q8IZP9 1017 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 LRRC43Q8N309 656 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 FOXJ1Q92949 421 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 RNF38Q9H0F5 515 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 TOR3AQ9H497 397 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 SMPD3Q9NY59 655 aaPredicted RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 NDUFA13Q9P0J0 144 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 ST14Q9Y5Y6 855 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 PTGES3LE9PB15 166 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 AGRPO00253 132 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 RFXAPO00287 272 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 ZSCAN9O15535 394 aaPredicted RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 PRAMEF11O60813 436 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 INMTO95050 263 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 TACR1P25103 407 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 MZF1P28698 734 aaPredicted RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 NEK2P51955 445 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 KPNA1P52294 538 aaPredicted RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 COL9A2Q14055 689 aaPredicted RBP10.55□□□□□ -0.72
USP28-201ENST00000003302 ZNF235Q14590 738 aa10.55□□□□□ -0.72
USP28-201ENST00000003302 ZBED5Q49AG3 693 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms