RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 HCN2Q9UL51 889 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SQORQ9Y6N5 450 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 NCAPD2Q15021 1401 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 DSCAML1Q8TD84 2053 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 E7ENX8 843 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TSTD3H0UI37 97 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PRPF3O43395 683 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FKBP6O75344 327 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 LGR5O75473 907 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 HMBSP08397 361 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SLC35G4P0C7Q5 338 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PVALBP20472 110 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SERPINB5P36952 375 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CD79BP40259 229 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CRKP46108 304 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CLCN2P51788 898 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CACNB3P54284 484 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TAP2Q03519 686 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 HSD17B12Q53GQ0 312 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 LACTB2Q53H82 288 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF484Q5JVG2 852 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 MAPKAPK5Q8IW41 473 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CCDC28AQ8IWP9 274 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CFAP52Q8N1V2 620 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 INO80EQ8NBZ0 244 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 OVCA2Q8WZ82 227 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PIK3R3Q92569 461 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TUBA1CQ9BQE3 449 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 UQCC2Q9BRT2 126 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF471Q9BX82 626 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF355PQ9NSJ1 428 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 MGAT4CQ9UBM8 478 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 MEMO1Q9Y316 297 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PCDHA11Q9Y5I1 949 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CACNG2Q9Y698 323 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 C5orf51A6NDU8 294 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FANCGO15287 622 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 BCAS1O75363 584 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TCEA3O75764 348 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF35P13682 527 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PKMP14618 531 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PRKACAP17612 351 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CMPK1P30085 196 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 POU4F1Q01851 419 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 MTAPQ13126 283 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SEMA5AQ13591 1074 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 MED22Q15528 200 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FAM214AQ32MH5 1076 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 GALNTL6Q49A17 601 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 STYK1Q6J9G0 422 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CXXC5Q7LFL8 322 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 C11orf96Q7Z7L8 435 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 OR7D4Q8NG98 312 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 BPIFA2Q96DR5 249 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 MUCL1Q96DR8 90 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 BORCS8Q96FH0 119 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 GFM1Q96RP9 751 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 MYL10Q9BUA6 226 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 UGT2B28Q9BY64 529 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FRMD8P1Q9BZ68 369 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SLC9A2Q9UBY0 812 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 MAN1B1Q9UKM7 699 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SHOC2Q9UQ13 582 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 PCDHGA11Q9Y5H2 935 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 EFCAB6Q5THR3 1501 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 B4E1Z4 1266 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 B4GALT4O60513 344 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 RSL1D1O76021 490 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FSBPO95073 299 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 WDPCPO95876 746 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ITGB5P18084 799 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 NR2F2P24468 414 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 RBM34P42696 430 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 GALK1P51570 392 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CCR4P51679 360 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CCNHP51946 323 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 E2F1Q01094 437 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 MCL1Q07820 350 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 DPYSL2Q16555 572 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ZMAT1Q5H9K5 638 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 GARNL3Q5VVW2 1013 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 RAP1GAP2Q684P5 730 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 TYW3Q6IPR3 259 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 GDF6Q6KF10 455 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SSX8Q7RTT4 187 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 BTLAQ7Z6A9 289 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 LRRC71Q8N4P6 559 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CEP76Q8TAP6 659 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SETD6Q8TBK2 473 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ST7LQ8TDW4 575 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 EEF1AKMT1Q8WVE0 214 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 SLC39A7Q92504 469 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 P2RX5Q93086 422 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF333Q96JL9 665 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 CMTM3Q96MX0 182 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 DBNDD1Q9H9R9 158 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FBRSQ9HAH7 460 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 ACTL7BQ9Y614 415 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 A2ML1A8K2U0 1454 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 IRS2Q9Y4H2 1338 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms